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User: Manca Marco PATH

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m******@maastrichtuniversity.nl

Posts by Manca Marco PATH

<prev • 34 results • page 1 of 4 • next >
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lapack routines cannot be loaded [Help request]
... Dear BioConductor and R fellow users I apologize in advance for double posting, but I am not sure which list would actually be best fit for this message. I am experiencing a weird error with my R installation on Ubuntu 10.04.4 (LTS) 64bit: When I run R on the terminal everything goes smoothly: ...
limma written 6.2 years ago by Manca Marco PATH340 • updated 6.2 years ago by Martin Morgan ♦♦ 22k
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Comment: C: GPU Computing with Flow Cytometry
... Dear Kevin I am no expert of the package you are enquiring about, but in general you might be interested in substituting the generic BLAS on your machine with Intel's MKL (non free, but available with no costs for research via Intel) in order to enable native parallelization of most of the plausibl ...
written 6.3 years ago by Manca Marco PATH340
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Answer: A: how to get a list of the genes in each module in WGCNA
... Dear Chris you might take advantage of the rich set of tutorials that Langfelder and Horvath have made available on their WGCNA page ( http://www.genet ics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/ ) Specifically the one entitled "Interfacing network analysis with other data suc ...
written 7.1 years ago by Manca Marco PATH340
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Answer: A: organism abbreviations (SPIA package)
... Dear Jing, please take a look at this page: http://www.genome.jp/kegg/catalog/org_list.html Hope it helps, Marco -- Marco Manca, MD University of Maastricht Faculty of Health, Medicine and Life Sciences (FHML) Cardiovascular Research Institute (CARIM) Mailing address: PO Box 616, 6200 MD Maas ...
written 7.5 years ago by Manca Marco PATH340
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Answer: A: problem with the KEGGSOAP package
... Dear Naha, I suppose it has to do with this announcement: http://www.genome.jp/kegg/docs/plea.html from which I extract the information most relevant to your query: "Starting on July 1, 2011 the KEGG FTP site for academic users will be transferred from GenomeNet at Kyoto University to NPO Bioinfor ...
written 7.5 years ago by Manca Marco PATH340
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GEOsubmission help request
... Dear Alexandre, good morning. It is my first time trying to submit an expression dataset to GEO and, after reading around the web a bit, I have decided to try to approach the task using the tool you have developed for R/Bioconductor. Unfortunately I get stuck somewhere and the message I receive i ...
written 7.8 years ago by Manca Marco PATH340 • updated 7.8 years ago by Alexandre Kuhn20
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Answer: A: HELP: MICROARRAYS
... Dear Poonam, first of all might I invite you to read the posting guide here? -> http://www.bioconductor.org/help/mailing-list/posting-guide/ Might I also remind you that is commonly accepted netiquette not to use afinalistic text capitalization in a message, as it is equivalent to screaming to ...
written 8.0 years ago by Manca Marco PATH340
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Answer: A: IPI to entrez id
... Hi Viritha, I have found this old answer to a similar question and I think it should still apply: << Not sure that it is this easy. The IPI are protein identifiers. GO categories classify genes. Neither the mapping from protein to gene or gene to GO category is 1:1. GO categories form a h ...
written 8.0 years ago by Manca Marco PATH340
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Answer: A: arrayQualityMetrics error
... Could it be related to the installation of the library libxml2 on your linux machine? Could you give us your capabilities() and traceback() after the error message? All the best, Marco -- Marco Manca, MD University of Maastricht Faculty of Health, Medicine and Life Sciences (FHML) Cardiovascular ...
written 8.0 years ago by Manca Marco PATH340
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Answer: A: samr - extract genes from siggenes.table
... I am not sure about this... I think they have logFC larger than 2... you are simply seeing them in scientific notation. Why don't you try setting the option scipen (penalty for scientific notation) "on the high side"? Something like: > options(scipen = 50) should be more than enough... Any ...
written 8.0 years ago by Manca Marco PATH340

Latest awards to Manca Marco PATH

Popular Question 6.2 years ago, created a question with more than 1,000 views. For GEOquery -> cannot open URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/ ....

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