User: Roman

gravatar for Roman
Roman 20
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20
Status:
New User
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Last seen:
9 months, 1 week ago
Joined:
8 years, 10 months ago
Email:
r***********@polsl.pl

Posts by Roman

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Comment: C: Average read counts and batch-effect correction in edgeR
... Thank you for the suggestion, I will replace pseudo-counts with CPM. ...
written 9 months ago by Roman 20
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Comment: C: Average read counts and batch-effect correction in edgeR
... Thank you very much! this is exactly what I needed. The reason why I stick to the "classic" edgeR is because it provides the pseudo-counts that I needed to create visualizations for individual features (requested by my collaborator). I am aware that this is not the best way of doing the analysis a ...
written 9 months ago by Roman 20
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Average read counts and batch-effect correction in edgeR
... Hi everyone, I am using edgeR to identify differentially expressed transcripts based on a simple RNA-seq setup (tumor vs control samples). The *DGELRT* object with results provided by edgeR contains, among others, logFC values calculated for the contrast that I used (Tumor vs Control). I additional ...
edger ngs rna-seq batch-effect read counts written 9 months ago by Roman 20 • updated 9 months ago by Aaron Lun25k
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PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
... writes: > > Dear Roman, all > > Recently we tried your version of Annotation files for Gene 1.0 ST > array that your team built from PLANdbAffy DB . I encountered some > problems so I hope you can help. > > You provide nice CDF and Affy PGF/CLF files , but, the PGF/CLF w ...
annotation cdf probe affy oligo xps dose written 8.8 years ago by Roman 20

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