User: Santosh Patnaik

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6 years, 8 months ago
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8 years, 10 months ago
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Posts by Santosh Patnaik

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Comment: C: edgeR for data combined from different studies and/or platforms
... Thank you for your thoughts. I want to compare the two cancers to study cancer-specific genes/pathways. Both are cancers of the same organ. There is no sample that is common to both data-sets. The sets do include cancer-adjacent normal tissue samples and I can examine the combined data to see if th ...
written 6.7 years ago by Santosh Patnaik30
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Bayesian additive regression trees (BART) for classification analysis of gene expression data
... Dear all, I want to use Bayesian additive regression trees (BART) for classification analysis of gene expression data. The BayesTree R package implements BART but I cannot find either on the web or in published literature relevant code to use and learn from for gene expression analysis. I will be g ...
bayesian regression written 8.8 years ago by Santosh Patnaik30
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'Empty model' error during Monte Carlo cross-validation of SVM classification with the CMA package
... Hi, I am using the CMA package to perform internal, Monte Carlo cross-validation (MCCV) on SVM classifiers in a microarray dataset. The dataset has numerical, non-NA values for ~400 genes for 45 samples belonging to one of two classes (labels 0 or 1; at about 1:1 proportion). I am trying a 1000-ite ...
microarray classification limma cma written 8.8 years ago by Santosh Patnaik30

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