User: Ed Siefker

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Ed Siefker30
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30
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Last seen:
8 years, 2 months ago
Joined:
8 years, 4 months ago
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e*******@creighton.edu

Posts by Ed Siefker

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xps: root scheme annotations
... I am trying to analyze data from Affymetrix Mouse Gene 1.0 ST arrays. I am using the 'xps' package as recommended by this list. I compiled and installed root successfully, and was able to install xps. I am now trying to follow the instructions in Appendix A of xps.pdf. My problem is finding the rig ...
annotation xps written 8.2 years ago by Ed Siefker30 • updated 8.2 years ago by cstrato3.9k
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affylmGUI annotations
... I am trying to analyze data from Affymetrix Mouse Gene 1.0 ST arrays. I am using R 2.13.0 with affylmGUI and all its dependencies freshly installed. I have analyzed my data exactly as described in the Estrogen Worked Example from the documentation. I get no annotations on my toptable, just probese ...
annotation annotate affylmgui written 8.2 years ago by Ed Siefker30 • updated 8.2 years ago by Richard Friedman2.0k
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mirna20.db
... I am trying to annotate a project with BRB array tools. It uses bioconductor annotation packages for this. My chips are the new Affymetrix miRNA 2.0 chips, and BRB requires a mirna20.db file to annotate these. However it cannot fetch it, and I can't find it anywhere. Is this a file that I'd get fr ...
mirna annotation annotate written 8.4 years ago by Ed Siefker30 • updated 8.4 years ago by Juan C Oliveros Collazos190

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