User: Jing Huang

gravatar for Jing Huang
Jing Huang380
Reputation:
380
Status:
Trusted
Location:
Last seen:
7 years ago
Joined:
8 years, 4 months ago
Email:
h******@ohsu.edu

Posts by Jing Huang

<prev • 38 results • page 1 of 4 • next >
0
votes
1
answer
1.0k
views
1
answers
Answer: A: promoter prediction
... Many thanks Paul. Let me first following your advices and do some investigations during holiday. Then, I will be able to define the question more specific. Jing On 11/18/12 8:09 PM, "Paul Shannon" wrote: >Hi Jing, > >I am including the Bioconductor email list so that we will have a rec ...
written 7.0 years ago by Jing Huang380
0
votes
1
answer
707
views
1
answers
Comment: C: predicting transcription factors
... Hi Paul, Your interpretations are right on my problem. Jing On 6/5/12 10:24 AM, "Paul Shannon" wrote: >Dear Jing Huang, > >Let me make sure I correctly grasp your problem. > > 1) You have a set of co-regulated genes > 2) You wish to identify possible shared transcription facto ...
written 7.5 years ago by Jing Huang380
0
votes
1
answer
707
views
1
answers
Comment: C: predicting transcription factors
... THANK you Paul. Your interpretation is right on my problem. Jing On 6/5/12 10:24 AM, "Paul Shannon" wrote: >Dear Jing Huang, > >Let me make sure I correctly grasp your problem. > > 1) You have a set of co-regulated genes > 2) You wish to identify possible shared transcription ...
written 7.5 years ago by Jing Huang380
0
votes
1
answer
707
views
1
answer
predicting transcription factors
... Hi Experts, I am interested in predicting transcription factors for a specific family of genes. According to my readings, it is possible to predict transcription factors for the genes that are expressed accordingly with similar pattern (up or down regulated). I don't know how. Can somebody provide ...
transcription written 7.5 years ago by Jing Huang380 • updated 7.5 years ago by Paul Shannon750
0
votes
2
answers
525
views
2
answers
Comment: C: basic R question
... Many THANK!! Works great. Jing From: "Tim Triche, Jr." > Reply-To: "ttriche@usc.edu" > Date: Mon, 23 Apr 2012 16:49:05 -0700 To: Steve Lianoglou > Cc: Jing Huang >, "bioconductor@r-project.org" > Subject: Re: [BioC] basic R question Oops, you are right, I meant ncol(eset.vsn) a.k.a ...
written 7.6 years ago by Jing Huang380
0
votes
2
answers
525
views
2
answers
basic R question
... Hi Expert! I am trying to get rid of the features that contain more than half of samples with NA data. Could you help me? Here is the example. > head(exprs(eset.vsn)) GSM48598 GSM48617 GSM48600 GSM48601 GSM48602 GSM48604 GSM48607 GSM48608 GSM48614 GSM48616 GSM48599 GSM48 ...
written 7.6 years ago by Jing Huang380 • updated 7.6 years ago by Tim Triche4.2k
0
votes
2
answers
779
views
2
answers
Comment: C: eset from GEOqury pkg
... Many thanks Sean. Jing -----Original Message----- From: seandavi@gmail.com [mailto:seandavi@gmail.com] On Behalf Of Sean Davis Sent: Thursday, March 22, 2012 4:29 AM To: Jing Huang Cc: bioconductor at r-project.org Subject: Re: [BioC] eset from GEOqury pkg On Wed, Mar 21, 2012 at 6:43 PM, Jing Hu ...
written 7.7 years ago by Jing Huang380
0
votes
2
answers
779
views
2
answers
eset from GEOqury pkg
... Hi Sean, Do you know that eset generated from GDS dataset a few month ago is different from the eset generated now? Old eset: > eset ExpressionSet (storageMode: lockedEnvironment) assayData: 22690 features, 5 samples element names: exprs protocolData: none phenoData sampleNames: GSM60394 G ...
go written 7.7 years ago by Jing Huang380 • updated 7.7 years ago by Sean Davis21k
0
votes
0
answers
716
views
0
answers
Bioconductor Digest, Vol 106, Issue 21
... -----Original Message----- From: bioconductor-bounces@r-project.org [mailto:bioconductor- bounces@r-project.org] On Behalf Of bioconductor-request@r-project.org Sent: Thursday, December 22, 2011 3:00 AM To: bioconductor at r-project.org Subject: Bioconductor Digest, Vol 106, Issue 21 Send Biocond ...
0
votes
0
answers
588
views
0
answers
question for SPIA package
... Dear Adi and all members, I have been trying to analyze and identify unique genes and their association with signal pathways by using SPIA package. Here is the link of one of the pathways that I generated: http://www.genome.jp/dbget- bin/show_pathway?hsa04530+5578+3993+4629+5590+5728 In this tabl ...
pathways spia written 8.0 years ago by Jing Huang380

Latest awards to Jing Huang

Popular Question 7.0 years ago, created a question with more than 1,000 views. For fit=lmFit limma package

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 242 users visited in the last hour