User: Xuekui Zhang

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Xuekui Zhang20
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Last seen:
7 years, 5 months ago
Joined:
8 years, 3 months ago
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u********@gmail.com

Posts by Xuekui Zhang

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Answer: A: Excessive memory requirements of PING or bug?
... Hi Lars, Thanks for your feed back! Yes, cutting chromosome before segmentation is not preferred, since the cutting points might be where the peaks/nucleosomes are. To avoid this problem, you could run a sliding window (e.g. window size 300bp, step size 10 bp) on a chromosome, count reads cou ...
written 7.5 years ago by Xuekui Zhang20
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A question about the coordinate system in the yeast database
... Dear list, I am working with yeast genome "Saccharomyces cerevisiae". My sequences are aligned to reference genome of version "sacCer2". I found the ensembl annotation of genes has 3 versions, including SGD1.01, EF2, and EF3. I would like to use same coordinate system for aligned reads and an ...
annotation yeast written 8.3 years ago by Xuekui Zhang20 • updated 8.3 years ago by Hervé Pagès ♦♦ 14k

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