User: Jiang, Mike

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Jiang, Mike1.1k
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Posts by Jiang, Mike

<prev • 243 results • page 1 of 25 • next >
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Comment: C: Loading Flow Files
... As the error message said, your matrixStats package is corrupt and needs to be reinstalled. ...
written 8 days ago by Jiang, Mike1.1k
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Comment: C: Load FlowCore to read .fcs files in R
... Try the absolute full path to your fcs file. ...
written 6 weeks ago by Jiang, Mike1.1k
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Installing package BiocParallel failed
... > biocLite("BiocParallel") BioC_mirror: https://bioconductor.org Using Bioconductor 3.8 (BiocInstaller 1.31.1), R 3.5.0 (2018-04-23). Installing package(s) ‘BiocParallel’ Warning message: package ‘BiocParallel’ is not available (for R version 3.5.0) > sessionInfo() R version 3.5.0 (2018-04-2 ...
biocparallel written 8 weeks ago by Jiang, Mike1.1k • updated 8 weeks ago by Martin Morgan ♦♦ 22k
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Comment: C: Trying to plot MFI using Flowworkspace but parameters are transformed by 'flowjo
... The built-in versoin ofo 'pop.MFI' only computes the channels with non-NA stains (or desc column in your flowFrame). To remove that restriction, you can simply provide your own version of 'pop.MFI' by deleting that line of code pd <- pd[!is.na(desc), ]   ...
written 9 weeks ago by Jiang, Mike1.1k
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Answer: A: Trying to plot MFI using Flowworkspace but parameters are transformed by 'flowjo
... See https://github.com/RGLab/flowWorkspace/blob/trunk/R/getStats.R#L28 If that built-in 'pop.MFI' (https://github.com/RGLab/flowWorkspace/blob/trunk/R/getStats.R#L117) somehow doesn't meet your need, you can write you own version and pass it to the generic 'getStats' API ...
written 9 weeks ago by Jiang, Mike1.1k
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Comment: C: How to identify multiple datasets in FCS file through flowCore
... Compare $PnB keywords for both to see if it is caused by bitwidth difference ...
written 10 weeks ago by Jiang, Mike1.1k
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Comment: C: Beginner & HowTo-flowCore-Example
... Probably you haven't installed flowWorkspaceData package. ...
written 11 weeks ago by Jiang, Mike1.1k
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Comment: C: How to identify multiple datasets in FCS file through flowCore
... dd <- read.FCSheader(file) dd[[1]][["$NEXTDATA"]] should report 0 for single-dataset case. ...
written 12 weeks ago by Jiang, Mike1.1k
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Answer: A: trouble showing a polygon gate using geom_gate
... With this fix https://github.com/RGLab/ggcyto/issues/5#issuecomment-378765096, the gate should display without your manually tweaking the limits. ...
written 4 months ago by Jiang, Mike1.1k
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Answer: A: trouble showing a polygon gate using geom_gate
... Looks like the gate is truncated by the actual data range. what is the output of range(myFlowFrame, "data")? ...
written 4 months ago by Jiang, Mike1.1k

Latest awards to Jiang, Mike

Popular Question 13 months ago, created a question with more than 1,000 views. For flowCore package - logicle transformation
Scholar 13 months ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Scholar 13 months ago, created an answer that has been accepted. For A: OpenCyto -- time gate and border events
Scholar 13 months ago, created an answer that has been accepted. For A: trouble showing a polygon gate using geom_gate
Scholar 14 months ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Popular Question 15 months ago, created a question with more than 1,000 views. For Help with flowCore
Scholar 2.3 years ago, created an answer that has been accepted. For A: OpenCyto - getting gate coordinates
Teacher 2.3 years ago, created an answer with at least 3 up-votes. For A: parsing flowFrame@description in flowCore
Scholar 2.3 years ago, created an answer that has been accepted. For A: openCyto trouble importing xml file
Scholar 2.3 years ago, created an answer that has been accepted. For A: How to FlowCore
Scholar 2.3 years ago, created an answer that has been accepted. For A: ggcyto's axis_inverse_trans: Usage with GatingSet constructed in R
Scholar 2.3 years ago, created an answer that has been accepted. For A: How to transform cytometry data from CSV and not FCS file?
Scholar 2.3 years ago, created an answer that has been accepted. For A: How to edit parameters and description of fcs file
Scholar 2.3 years ago, created an answer that has been accepted. For A: parsing flowFrame@description in flowCore
Scholar 2.3 years ago, created an answer that has been accepted. For A: OpenCyto -- time gate and border events
Scholar 2.3 years ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Scholar 2.4 years ago, created an answer that has been accepted. For A: How to transform cytometry data from CSV and not FCS file?
Scholar 2.5 years ago, created an answer that has been accepted. For A: ggcyto's axis_inverse_trans: Usage with GatingSet constructed in R
Scholar 2.7 years ago, created an answer that has been accepted. For A: How to FlowCore
Scholar 2.8 years ago, created an answer that has been accepted. For A: timeLinePlot() ylab parameter doesn't work?
Centurion 2.8 years ago, created 100 posts.
Scholar 3.1 years ago, created an answer that has been accepted. For A: timeLinePlot() ylab parameter doesn't work?
Scholar 3.4 years ago, created an answer that has been accepted. For A: timeLinePlot() ylab parameter doesn't work?

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