User: Jiang, Mike

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Jiang, Mike1.2k
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Posts by Jiang, Mike

<prev • 249 results • page 1 of 25 • next >
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Comment: C: FlowJo workspace cannot be parsed with flowworkspace
... see my response here https://support.bioconductor.org/p/101761/#113267, which may also explain your error ...
written 25 days ago by Jiang, Mike1.2k
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Answer: A: Opencyto - detector name not found in flow data, but pretty sure it's there
... This typically indicates that gate in xml was referring to the raw dimension name 'FL03-A', which is no longer present in the compensated flow data (flowJo adds prefix after compensation, i.e. <FL03-A> or comp-FL03-A). So double check your xml workspace and make sure the gates are defined on ...
written 25 days ago by Jiang, Mike1.2k
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Answer: A: FlowJo workspace cannot be parsed with flowworkspace
... It didn't find the fcs files, try to specify the path to the fcs files through `path` argument ...
written 25 days ago by Jiang, Mike1.2k
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Comment: C: Cannot install flowViz package because dependency flowCore cannot be found, howe
... try BiocManager::install("flowViz") from the fresh-started R session and paste the entire error message if still fails. ...
written 5 weeks ago by Jiang, Mike1.2k
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Comment: C: Modifying or writing a FCS file in R using the FlowCore package
... use flowFrame constructor see example https://github.com/RGLab/flowCore/blob/trunk/tests/testthat/test-IO.R#L268-L277 You will need the latest Bioc devel or github trunk version of flowCore. ...
written 5 weeks ago by Jiang, Mike1.2k
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Answer: A: How do I apply a singleParameterTransform to a number of parameters in a flowFra
... You should use logicle transformation. See details and example codes by typing ?estimateLogicle ...
written 6 weeks ago by Jiang, Mike1.2k
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Comment: C: Loading Flow Files
... As the error message said, your matrixStats package is corrupt and needs to be reinstalled. ...
written 10 weeks ago by Jiang, Mike1.2k
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Comment: C: Load FlowCore to read .fcs files in R
... Try the absolute full path to your fcs file. ...
written 3 months ago by Jiang, Mike1.2k
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Installing package BiocParallel failed
... > biocLite("BiocParallel") BioC_mirror: https://bioconductor.org Using Bioconductor 3.8 (BiocInstaller 1.31.1), R 3.5.0 (2018-04-23). Installing package(s) ‘BiocParallel’ Warning message: package ‘BiocParallel’ is not available (for R version 3.5.0) > sessionInfo() R version 3.5.0 (2018-04-2 ...
biocparallel written 4 months ago by Jiang, Mike1.2k • updated 4 months ago by Martin Morgan ♦♦ 22k
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Comment: C: Trying to plot MFI using Flowworkspace but parameters are transformed by 'flowjo
... The built-in versoin ofo 'pop.MFI' only computes the channels with non-NA stains (or desc column in your flowFrame). To remove that restriction, you can simply provide your own version of 'pop.MFI' by deleting that line of code pd <- pd[!is.na(desc), ]   ...
written 4 months ago by Jiang, Mike1.2k

Latest awards to Jiang, Mike

Scholar 6 weeks ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Popular Question 10 weeks ago, created a question with more than 1,000 views. For how to read FCS3.1 files?
Scholar 15 months ago, created an answer that has been accepted. For A: trouble showing a polygon gate using geom_gate
Scholar 15 months ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Scholar 15 months ago, created an answer that has been accepted. For A: OpenCyto -- time gate and border events
Popular Question 15 months ago, created a question with more than 1,000 views. For flowCore package - logicle transformation
Scholar 16 months ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Popular Question 18 months ago, created a question with more than 1,000 views. For Help with flowCore
Scholar 2.5 years ago, created an answer that has been accepted. For A: OpenCyto -- time gate and border events
Scholar 2.5 years ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Scholar 2.5 years ago, created an answer that has been accepted. For A: How to transform cytometry data from CSV and not FCS file?
Teacher 2.5 years ago, created an answer with at least 3 up-votes. For A: parsing flowFrame@description in flowCore
Scholar 2.5 years ago, created an answer that has been accepted. For A: openCyto trouble importing xml file
Scholar 2.5 years ago, created an answer that has been accepted. For A: How to FlowCore
Scholar 2.5 years ago, created an answer that has been accepted. For A: ggcyto's axis_inverse_trans: Usage with GatingSet constructed in R
Scholar 2.5 years ago, created an answer that has been accepted. For A: OpenCyto - getting gate coordinates
Scholar 2.5 years ago, created an answer that has been accepted. For A: How to edit parameters and description of fcs file
Scholar 2.5 years ago, created an answer that has been accepted. For A: parsing flowFrame@description in flowCore
Scholar 2.5 years ago, created an answer that has been accepted. For A: How to transform cytometry data from CSV and not FCS file?
Scholar 2.7 years ago, created an answer that has been accepted. For A: ggcyto's axis_inverse_trans: Usage with GatingSet constructed in R
Scholar 2.9 years ago, created an answer that has been accepted. For A: How to FlowCore
Scholar 2.9 years ago, created an answer that has been accepted. For A: timeLinePlot() ylab parameter doesn't work?
Centurion 3.0 years ago, created 100 posts.
Scholar 3.2 years ago, created an answer that has been accepted. For A: timeLinePlot() ylab parameter doesn't work?
Scholar 3.6 years ago, created an answer that has been accepted. For A: timeLinePlot() ylab parameter doesn't work?

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