User: Jiang, Mike

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Jiang, Mike1.1k
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Posts by Jiang, Mike

<prev • 241 results • page 1 of 25 • next >
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Installing package BiocParallel failed
... > biocLite("BiocParallel") BioC_mirror: https://bioconductor.org Using Bioconductor 3.8 (BiocInstaller 1.31.1), R 3.5.0 (2018-04-23). Installing package(s) ‘BiocParallel’ Warning message: package ‘BiocParallel’ is not available (for R version 3.5.0) > sessionInfo() R version 3.5.0 (2018-04-2 ...
biocparallel written 5 days ago by Jiang, Mike1.1k • updated 4 days ago by Martin Morgan ♦♦ 21k
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Comment: C: Trying to plot MFI using Flowworkspace but parameters are transformed by 'flowjo
... The built-in versoin ofo 'pop.MFI' only computes the channels with non-NA stains (or desc column in your flowFrame). To remove that restriction, you can simply provide your own version of 'pop.MFI' by deleting that line of code pd <- pd[!is.na(desc), ]   ...
written 8 days ago by Jiang, Mike1.1k
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Answer: A: Trying to plot MFI using Flowworkspace but parameters are transformed by 'flowjo
... See https://github.com/RGLab/flowWorkspace/blob/trunk/R/getStats.R#L28 If that built-in 'pop.MFI' (https://github.com/RGLab/flowWorkspace/blob/trunk/R/getStats.R#L117) somehow doesn't meet your need, you can write you own version and pass it to the generic 'getStats' API ...
written 12 days ago by Jiang, Mike1.1k
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Comment: C: How to identify multiple datasets in FCS file through flowCore
... Compare $PnB keywords for both to see if it is caused by bitwidth difference ...
written 19 days ago by Jiang, Mike1.1k
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Comment: C: Beginner & HowTo-flowCore-Example
... Probably you haven't installed flowWorkspaceData package. ...
written 27 days ago by Jiang, Mike1.1k
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Comment: C: How to identify multiple datasets in FCS file through flowCore
... dd <- read.FCSheader(file) dd[[1]][["$NEXTDATA"]] should report 0 for single-dataset case. ...
written 28 days ago by Jiang, Mike1.1k
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Answer: A: trouble showing a polygon gate using geom_gate
... With this fix https://github.com/RGLab/ggcyto/issues/5#issuecomment-378765096, the gate should display without your manually tweaking the limits. ...
written 11 weeks ago by Jiang, Mike1.1k
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Answer: A: trouble showing a polygon gate using geom_gate
... Looks like the gate is truncated by the actual data range. what is the output of range(myFlowFrame, "data")? ...
written 11 weeks ago by Jiang, Mike1.1k
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Comment: C: Unable to install flowWorkspace from github
... All our github 'trunk' branch is in sync with the 'devel' version of BioC. So as Martin said, install them from BioC devel is the easiest way to go. `cytoUtils` is not in BioC yet, but once you get the other flow tool chains installed, you can install its the `pureR` branch install_github("RGLab/cyt ...
written 3 months ago by Jiang, Mike1.1k
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Comment: C: Exporting FCS from FlowJo for flowCore & cytofkit analysis
... Here is the related post regarding to linearization https://github.com/RGLab/flowCore/issues/99 ...
written 3 months ago by Jiang, Mike1.1k

Latest awards to Jiang, Mike

Popular Question 11 months ago, created a question with more than 1,000 views. For flowCore package - logicle transformation
Scholar 11 months ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Scholar 11 months ago, created an answer that has been accepted. For A: OpenCyto -- time gate and border events
Scholar 11 months ago, created an answer that has been accepted. For A: trouble showing a polygon gate using geom_gate
Scholar 12 months ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Popular Question 14 months ago, created a question with more than 1,000 views. For Help with flowCore
Scholar 2.2 years ago, created an answer that has been accepted. For A: OpenCyto - getting gate coordinates
Teacher 2.2 years ago, created an answer with at least 3 up-votes. For A: parsing flowFrame@description in flowCore
Scholar 2.2 years ago, created an answer that has been accepted. For A: openCyto trouble importing xml file
Scholar 2.2 years ago, created an answer that has been accepted. For A: How to FlowCore
Scholar 2.2 years ago, created an answer that has been accepted. For A: ggcyto's axis_inverse_trans: Usage with GatingSet constructed in R
Scholar 2.2 years ago, created an answer that has been accepted. For A: How to transform cytometry data from CSV and not FCS file?
Scholar 2.2 years ago, created an answer that has been accepted. For A: How to edit parameters and description of fcs file
Scholar 2.2 years ago, created an answer that has been accepted. For A: parsing flowFrame@description in flowCore
Scholar 2.2 years ago, created an answer that has been accepted. For A: OpenCyto -- time gate and border events
Scholar 2.2 years ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Scholar 2.2 years ago, created an answer that has been accepted. For A: How to transform cytometry data from CSV and not FCS file?
Scholar 2.4 years ago, created an answer that has been accepted. For A: ggcyto's axis_inverse_trans: Usage with GatingSet constructed in R
Scholar 2.5 years ago, created an answer that has been accepted. For A: How to FlowCore
Scholar 2.6 years ago, created an answer that has been accepted. For A: timeLinePlot() ylab parameter doesn't work?
Centurion 2.7 years ago, created 100 posts.
Scholar 2.9 years ago, created an answer that has been accepted. For A: timeLinePlot() ylab parameter doesn't work?
Scholar 3.3 years ago, created an answer that has been accepted. For A: timeLinePlot() ylab parameter doesn't work?

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