User: Jiang, Mike

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Jiang, Mike1.2k
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Posts by Jiang, Mike

<prev • 264 results • page 1 of 27 • next >
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Answer: A: polyFunctions gate in OpenCyto 1.20
... I've pushed the fix to `trunk` and `RELEASE_3_8` branches of RGLab's github (unfortunately, I won't be able to push to Bioconductor RELEASE_3_8 since it is not the current active release). Let me know if it works for you. ...
written 23 days ago by Jiang, Mike1.2k
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Comment: C: polyFunctions gate in OpenCyto 1.20
... Again, you should use the latest release: openCyto 1.22 ...
written 28 days ago by Jiang, Mike1.2k
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Comment: C: polyFunctions gate in OpenCyto 1.20
... This csv ("Gating Template CSV") has the issue at line78 CD4+CD45RA+- -+ CD4+IL4- boolGate where 'pop' column should be '+' for 'boolGate'. For the 'polyfunctions' version, It loads without problems with the latest Bioc release 3.9 > packageVersion("openCyto") [1] ‘1.22.0’ ...
written 28 days ago by Jiang, Mike1.2k
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Answer: A: gatingML examples needed
... Use CytoML to Import gatingML generated from Cytobank. See https://github.com/RGLab/CytoML Then visualize the gates by ggcyto ...
written 3 months ago by Jiang, Mike1.2k
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Comment: C: flowCore: uneven number of tokens / The last keyword is dropped.
... suppressWarnings(read.FCS("test.fcs", emptyValue=FALSE)) ...
written 3 months ago by Jiang, Mike1.2k
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Comment: C: How to select left hand side of mindensity2 gate
... openCyto tries to interpret pop = '-' in a generic way (i.e. set 'negate' flag to the gate) that is not limited to 1d gate but can also work the same manner for 2d gate and even non-geometrical gate (e.g. bool gate). So you will get a negated 1d gate that is open-ended at right side and 'ggcyto' is ...
written 3 months ago by Jiang, Mike1.2k
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Comment: C: How to select left hand side of mindensity2 gate
... flowCore&flowWorkspace provide the relative low-level of APIs to interact with the basic data structures (e.g. flowSet, Gatingset). For the auto gating, openCyto package provides more high-level interlaces and convenient wrappers (which are built upon those two packages). They operate at the di ...
written 4 months ago by Jiang, Mike1.2k
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Answer: A: How to select left hand side of mindensity2 gate
... I'd recommend openCyto gating functions to be used with its template-based gating framework. Instead of iterating through each sample (i.e. fsApply) of each gated population (i.e. getData) and invoking mindensity and adding gates manually, you can simply submit the gating strategy to the framework a ...
written 4 months ago by Jiang, Mike1.2k
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Comment: C: ncdfFlowSet with dim=3
... Glad to hear! Thanks for reporting the issue. ...
written 4 months ago by Jiang, Mike1.2k
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Answer: A: ncdfFlowSet with dim=3
... see the solution here https://github.com/RGLab/ncdfFlow/issues/44#issuecomment-459527469 ...
written 4 months ago by Jiang, Mike1.2k

Latest awards to Jiang, Mike

Scholar 9 months ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Popular Question 10 months ago, created a question with more than 1,000 views. For how to read FCS3.1 files?
Scholar 24 months ago, created an answer that has been accepted. For A: trouble showing a polygon gate using geom_gate
Scholar 24 months ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Scholar 24 months ago, created an answer that has been accepted. For A: OpenCyto -- time gate and border events
Popular Question 24 months ago, created a question with more than 1,000 views. For flowCore package - logicle transformation
Scholar 2.1 years ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Help with flowCore
Scholar 3.1 years ago, created an answer that has been accepted. For A: OpenCyto -- time gate and border events
Scholar 3.1 years ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Scholar 3.1 years ago, created an answer that has been accepted. For A: How to transform cytometry data from CSV and not FCS file?
Teacher 3.1 years ago, created an answer with at least 3 up-votes. For A: parsing flowFrame@description in flowCore
Scholar 3.1 years ago, created an answer that has been accepted. For A: openCyto trouble importing xml file
Scholar 3.1 years ago, created an answer that has been accepted. For A: How to FlowCore
Scholar 3.1 years ago, created an answer that has been accepted. For A: ggcyto's axis_inverse_trans: Usage with GatingSet constructed in R
Scholar 3.1 years ago, created an answer that has been accepted. For A: OpenCyto - getting gate coordinates
Scholar 3.1 years ago, created an answer that has been accepted. For A: How to edit parameters and description of fcs file
Scholar 3.1 years ago, created an answer that has been accepted. For A: parsing flowFrame@description in flowCore
Scholar 3.2 years ago, created an answer that has been accepted. For A: How to transform cytometry data from CSV and not FCS file?
Scholar 3.4 years ago, created an answer that has been accepted. For A: ggcyto's axis_inverse_trans: Usage with GatingSet constructed in R
Scholar 3.5 years ago, created an answer that has been accepted. For A: How to FlowCore
Scholar 3.6 years ago, created an answer that has been accepted. For A: timeLinePlot() ylab parameter doesn't work?
Centurion 3.6 years ago, created 100 posts.
Scholar 3.9 years ago, created an answer that has been accepted. For A: timeLinePlot() ylab parameter doesn't work?
Scholar 4.3 years ago, created an answer that has been accepted. For A: timeLinePlot() ylab parameter doesn't work?

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