User: Jiang, Mike

gravatar for Jiang, Mike
Jiang, Mike1.0k
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Posts by Jiang, Mike

<prev • 228 results • page 1 of 23 • next >
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Answer: A: Loop for mass analyses and extraction of FCS data
... It is recommended to use `add` method to append these gates to the `GatingSet` object from flowWorkspace package to capture your entire gating process for better organizing, archiving and retrieving the gating hierarchy. See the vignette of flowCore for more details. ...
written 25 days ago by Jiang, Mike1.0k
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Answer: A: flowQ: Unable to install flowQ on Mac R v3.4.1
... Make sure ImageMagick is installed properly and can be found in default path. ...
written 5 weeks ago by Jiang, Mike1.0k
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Answer: A: Problems with installing flowClust
... Bioc has some issue with windows build on release branch. You can install the devel version instead http://bioconductor.org/packages/3.6/bioc/bin/windows/contrib/3.4/flowClust_3.15.0.zip ...
written 5 weeks ago by Jiang, Mike1.0k
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Answer: A: opencyto Error in .validity_check_alias
... In your parent column, you still referred to the old alias name 'Q1: CD4-FITC-H- , CD8-PE-H+', which no longer exists in your template. You want to keep these updated. Also, in your pop column, you should have simple '+' or '-' symbols instead of the full channel/marker names, which contain these ...
written 5 weeks ago by Jiang, Mike1.0k
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Comment: C: Problems with installing flowClust
... You should use BiocLite to install the binary from bioconductor directly instead of building it from source. ...
written 6 weeks ago by Jiang, Mike1.0k
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Answer: A: Qualifier / getQAStats: Problem to get statisric from a GatingSet
... I pushed the bug fix to github. Try devtools::install_github("RGLab/QUALIFIER", ref = "trunk) ...
written 6 weeks ago by Jiang, Mike1.0k
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Answer: A: opencyto Error in .validity_check_alias
... Can you post your template? Also the traceback output for the error after you renamed the alias ...
written 6 weeks ago by Jiang, Mike1.0k
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Answer: A: Error executing flowcore vignette
... Nothing wrong with the code and operator '%&%', you should type traceback() to find out where exactly failed. But this concept of combining two filters has been deprecated, you want to move on to 'GatingSet' section to learn how to build, track and record the gating hierarchy. Also refer to ' ...
written 8 weeks ago by Jiang, Mike1.0k
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Answer: A: Using inverse logicle in flowCore
... Right, it is current not easy to such inversion directly on the result from 'estimateLogicle' since it is a special object "transformList" and 'inverseLogicleTransform' expects a `transform` object which is typically created using the 'logicleTransform' function. Currently the only way is using `cy ...
written 10 weeks ago by Jiang, Mike1.0k
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Answer: A: Error when reading the fcv file
... I've pushed the fix to both bioconductor devel and release see https://github.com/RGLab/flowCore/issues/85#issuecomment-328613970 for details ...
written 10 weeks ago by Jiang, Mike1.0k

Latest awards to Jiang, Mike

Scholar 5 months ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Popular Question 7 months ago, created a question with more than 1,000 views. For Help with flowCore
Scholar 19 months ago, created an answer that has been accepted. For A: How to FlowCore
Scholar 19 months ago, created an answer that has been accepted. For A: ggcyto's axis_inverse_trans: Usage with GatingSet constructed in R
Scholar 19 months ago, created an answer that has been accepted. For A: OpenCyto - getting gate coordinates
Scholar 19 months ago, created an answer that has been accepted. For A: How to transform cytometry data from CSV and not FCS file?
Scholar 19 months ago, created an answer that has been accepted. For A: How to edit parameters and description of fcs file
Scholar 19 months ago, created an answer that has been accepted. For A: parsing flowFrame@description in flowCore
Scholar 19 months ago, created an answer that has been accepted. For A: OpenCyto -- time gate and border events
Scholar 19 months ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: parsing flowFrame@description in flowCore
Scholar 19 months ago, created an answer that has been accepted. For A: openCyto trouble importing xml file
Scholar 19 months ago, created an answer that has been accepted. For A: How to transform cytometry data from CSV and not FCS file?
Scholar 21 months ago, created an answer that has been accepted. For A: ggcyto's axis_inverse_trans: Usage with GatingSet constructed in R
Scholar 23 months ago, created an answer that has been accepted. For A: How to FlowCore
Scholar 2.0 years ago, created an answer that has been accepted. For A: timeLinePlot() ylab parameter doesn't work?
Centurion 2.1 years ago, created 100 posts.
Scholar 2.3 years ago, created an answer that has been accepted. For A: timeLinePlot() ylab parameter doesn't work?
Scholar 2.7 years ago, created an answer that has been accepted. For A: timeLinePlot() ylab parameter doesn't work?

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