User: Jiang, Mike

gravatar for Jiang, Mike
Jiang, Mike1.2k
Reputation:
1,240
Status:
Trusted
Location:
(Private Address)
Last seen:
1 month ago
Joined:
8 years, 2 months ago
Email:
w******@fhcrc.org

Posts by Jiang, Mike

<prev • 267 results • page 1 of 27 • next >
0
votes
1
answer
67
views
1
answers
Answer: A: Reproducing FlowJo Biexponential Transform in flowCore
... You should use flowWorkspace::flowjo_biexp() ...
written 4 weeks ago by Jiang, Mike1.2k
0
votes
1
answer
76
views
1
answers
Answer: A: selecting multiple clusters from flowClust::tmixFilter
... flowCore::workflow was deprecated by flowWorkspace::GatingSet for representing/storing/manipulating the gating trees and gated subpopulation data. Take a look at the vignette of flowWorkspace for the basics of adding/querying the gates through GatingSet. On top of that, you can further automate your ...
written 6 weeks ago by Jiang, Mike1.2k
1
vote
0
answers
84
views
0
answers
Comment: C: flowcore:::read.FCS does not read FCS3.1 correctly
... Try to set `'truncate_max_range = FALSE'` to see if that helps. ...
written 3 months ago by Jiang, Mike1.2k
2
votes
2
answers
276
views
2
answers
Answer: A: polyFunctions gate in OpenCyto 1.20
... I've pushed the fix to `trunk` and `RELEASE_3_8` branches of RGLab's github (unfortunately, I won't be able to push to Bioconductor RELEASE_3_8 since it is not the current active release). Let me know if it works for you. ...
written 6 months ago by Jiang, Mike1.2k
0
votes
2
answers
276
views
2
answers
Comment: C: polyFunctions gate in OpenCyto 1.20
... Again, you should use the latest release: openCyto 1.22 ...
written 6 months ago by Jiang, Mike1.2k
1
vote
2
answers
276
views
2
answers
Comment: C: polyFunctions gate in OpenCyto 1.20
... This csv ("Gating Template CSV") has the issue at line78 CD4+CD45RA+- -+ CD4+IL4- boolGate where 'pop' column should be '+' for 'boolGate'. For the 'polyfunctions' version, It loads without problems with the latest Bioc release 3.9 > packageVersion("openCyto") [1] ‘1.22.0’ ...
written 6 months ago by Jiang, Mike1.2k
1
vote
1
answer
187
views
1
answers
Answer: A: gatingML examples needed
... Use CytoML to Import gatingML generated from Cytobank. See https://github.com/RGLab/CytoML Then visualize the gates by ggcyto ...
written 9 months ago by Jiang, Mike1.2k
0
votes
1
answer
356
views
1
answers
Comment: C: flowCore: uneven number of tokens / The last keyword is dropped.
... suppressWarnings(read.FCS("test.fcs", emptyValue=FALSE)) ...
written 9 months ago by Jiang, Mike1.2k
0
votes
1
answer
289
views
1
answers
Comment: C: How to select left hand side of mindensity2 gate
... openCyto tries to interpret pop = '-' in a generic way (i.e. set 'negate' flag to the gate) that is not limited to 1d gate but can also work the same manner for 2d gate and even non-geometrical gate (e.g. bool gate). So you will get a negated 1d gate that is open-ended at right side and 'ggcyto' is ...
written 9 months ago by Jiang, Mike1.2k
0
votes
1
answer
289
views
1
answers
Comment: C: How to select left hand side of mindensity2 gate
... flowCore&flowWorkspace provide the relative low-level of APIs to interact with the basic data structures (e.g. flowSet, Gatingset). For the auto gating, openCyto package provides more high-level interlaces and convenient wrappers (which are built upon those two packages). They operate at the di ...
written 10 months ago by Jiang, Mike1.2k

Latest awards to Jiang, Mike

Scholar 10 months ago, created an answer that has been accepted. For A: timeLinePlot() ylab parameter doesn't work?
Scholar 15 months ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Popular Question 16 months ago, created a question with more than 1,000 views. For how to read FCS3.1 files?
Scholar 2.5 years ago, created an answer that has been accepted. For A: trouble showing a polygon gate using geom_gate
Popular Question 2.5 years ago, created a question with more than 1,000 views. For flowCore package - logicle transformation
Scholar 2.5 years ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Scholar 2.5 years ago, created an answer that has been accepted. For A: OpenCyto -- time gate and border events
Scholar 2.5 years ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Help with flowCore
Scholar 3.6 years ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Scholar 3.6 years ago, created an answer that has been accepted. For A: How to edit parameters and description of fcs file
Teacher 3.6 years ago, created an answer with at least 3 up-votes. For A: parsing flowFrame@description in flowCore
Scholar 3.6 years ago, created an answer that has been accepted. For A: openCyto trouble importing xml file
Scholar 3.6 years ago, created an answer that has been accepted. For A: How to FlowCore
Scholar 3.6 years ago, created an answer that has been accepted. For A: ggcyto's axis_inverse_trans: Usage with GatingSet constructed in R
Scholar 3.6 years ago, created an answer that has been accepted. For A: OpenCyto - getting gate coordinates
Scholar 3.6 years ago, created an answer that has been accepted. For A: How to transform cytometry data from CSV and not FCS file?
Scholar 3.6 years ago, created an answer that has been accepted. For A: parsing flowFrame@description in flowCore
Scholar 3.6 years ago, created an answer that has been accepted. For A: OpenCyto -- time gate and border events
Scholar 3.7 years ago, created an answer that has been accepted. For A: How to transform cytometry data from CSV and not FCS file?
Scholar 3.8 years ago, created an answer that has been accepted. For A: ggcyto's axis_inverse_trans: Usage with GatingSet constructed in R
Scholar 4.0 years ago, created an answer that has been accepted. For A: How to FlowCore
Scholar 4.1 years ago, created an answer that has been accepted. For A: timeLinePlot() ylab parameter doesn't work?
Centurion 4.1 years ago, created 100 posts.
Scholar 4.4 years ago, created an answer that has been accepted. For A: timeLinePlot() ylab parameter doesn't work?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 380 users visited in the last hour