User: Jiang, Mike

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Jiang, Mike1.1k
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Posts by Jiang, Mike

<prev • 231 results • page 1 of 24 • next >
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Answer: A: Windows 10 openCyto Install: installation path not writeable, unable to update p
... The error was about the failure in installing flowClust package. You were currently using Bioconductor 3.5. The issue should be resolved if you upgrade to Bioconductor 3.6 (the latest release, and you may need to upgrade your R to 3.4.3)   ...
written 2 days ago by Jiang, Mike1.1k
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Answer: A: [flowCore] linearization of logarithmic data seems to be calculated wrong
...  flowCore currently implemented as 10^((x*f1/range), I just added f2 (https://github.com/RGLab/flowCore/commit/62d261828f5db530f5705b7228f87e420f97fd82), please check out the latest github trunk and let me know if the data looks correct before I push it to BioC. (I don't have the test case for this ...
written 23 days ago by Jiang, Mike1.1k
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Answer: A: Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array exte
...   First of all you should use channel (name col) instead of marker (desc col) to effectively identify fsc/ssc.   > fs[[1]] flowFrame object '060909.001' with 10000 cells and 7 observables: name desc range minRange maxRange $P1 FSC-H FSC-Height 1024 0 1023 $ ...
written 9 weeks ago by Jiang, Mike1.1k
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Answer: A: Loop for mass analyses and extraction of FCS data
... It is recommended to use `add` method to append these gates to the `GatingSet` object from flowWorkspace package to capture your entire gating process for better organizing, archiving and retrieving the gating hierarchy. See the vignette of flowCore for more details. ...
written 3 months ago by Jiang, Mike1.1k
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Answer: A: flowQ: Unable to install flowQ on Mac R v3.4.1
... Make sure ImageMagick is installed properly and can be found in default path. ...
written 4 months ago by Jiang, Mike1.1k
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Answer: A: Problems with installing flowClust
... Bioc has some issue with windows build on release branch. You can install the devel version instead http://bioconductor.org/packages/3.6/bioc/bin/windows/contrib/3.4/flowClust_3.15.0.zip ...
written 4 months ago by Jiang, Mike1.1k
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Answer: A: opencyto Error in .validity_check_alias
... In your parent column, you still referred to the old alias name 'Q1: CD4-FITC-H- , CD8-PE-H+', which no longer exists in your template. You want to keep these updated. Also, in your pop column, you should have simple '+' or '-' symbols instead of the full channel/marker names, which contain these ...
written 4 months ago by Jiang, Mike1.1k
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Comment: C: Problems with installing flowClust
... You should use BiocLite to install the binary from bioconductor directly instead of building it from source. ...
written 4 months ago by Jiang, Mike1.1k
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Answer: A: Qualifier / getQAStats: Problem to get statisric from a GatingSet
... I pushed the bug fix to github. Try devtools::install_github("RGLab/QUALIFIER", ref = "trunk) ...
written 4 months ago by Jiang, Mike1.1k
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Answer: A: opencyto Error in .validity_check_alias
... Can you post your template? Also the traceback output for the error after you renamed the alias ...
written 4 months ago by Jiang, Mike1.1k

Latest awards to Jiang, Mike

Scholar 8 months ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Popular Question 10 months ago, created a question with more than 1,000 views. For Help with flowCore
Scholar 22 months ago, created an answer that has been accepted. For A: How to FlowCore
Scholar 22 months ago, created an answer that has been accepted. For A: ggcyto's axis_inverse_trans: Usage with GatingSet constructed in R
Scholar 22 months ago, created an answer that has been accepted. For A: OpenCyto - getting gate coordinates
Scholar 22 months ago, created an answer that has been accepted. For A: How to transform cytometry data from CSV and not FCS file?
Scholar 22 months ago, created an answer that has been accepted. For A: How to edit parameters and description of fcs file
Scholar 22 months ago, created an answer that has been accepted. For A: parsing flowFrame@description in flowCore
Scholar 22 months ago, created an answer that has been accepted. For A: OpenCyto -- time gate and border events
Scholar 22 months ago, created an answer that has been accepted. For A: openCyto displaying gating panels
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: parsing flowFrame@description in flowCore
Scholar 22 months ago, created an answer that has been accepted. For A: openCyto trouble importing xml file
Scholar 22 months ago, created an answer that has been accepted. For A: How to transform cytometry data from CSV and not FCS file?
Scholar 2.0 years ago, created an answer that has been accepted. For A: ggcyto's axis_inverse_trans: Usage with GatingSet constructed in R
Scholar 2.2 years ago, created an answer that has been accepted. For A: How to FlowCore
Scholar 2.3 years ago, created an answer that has been accepted. For A: timeLinePlot() ylab parameter doesn't work?
Centurion 2.3 years ago, created 100 posts.
Scholar 2.6 years ago, created an answer that has been accepted. For A: timeLinePlot() ylab parameter doesn't work?
Scholar 3.0 years ago, created an answer that has been accepted. For A: timeLinePlot() ylab parameter doesn't work?

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