User: Christopher Howerton

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Last seen:
5 years, 10 months ago
Joined:
7 years, 6 months ago
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c*******@vet.upenn.edu

Posts by Christopher Howerton

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Comment: C: gCMAP for windows?
... Dan, Thanks for the quick response; I've never done it, but is it worth it to trying to figure out if I can compile both 'bigmemory' and 'gCMAP'? Chris ----- Original Message ----- From: "Dan Tenenbaum" To: "Christopher Howerton" Cc: bioconductor at r-project.org Sent: Thursday, May 30, 2013 2: ...
written 5.9 years ago by Christopher Howerton40
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gCMAP for windows?
... It's totally possible that I am messing this up, but is gCMAP not available for Windows? I've tried using the argument biocLite('gCMAP', type = "source") with the following output: > biocLite("gCMAP", type= "source") BioC_mirror: http://bioconductor.org Using Bioconductor version 2.12 (BiocInst ...
gcmap written 5.9 years ago by Christopher Howerton40 • updated 5.9 years ago by Dan Tenenbaum8.2k
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Chip-seq pipeline and cloud ami questions
... Hello, I have used Bioconductor for several local analyses of microarray experiments, but I have just started to work on an analysis of a Chip- seq experiment and I am finding myself a bit lost. The basic experimental design is a 2 (sex) X 2 (treatment) and for each biological replicate I have: Inp ...
sequencing microarray edger written 5.9 years ago by Christopher Howerton40
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Binomial regression of HTqPCR data
... Hello, I have been entertaining the notion that high Ct values, which are generally used as an indicator of no replication due to various reasons, might actually be a response worth prediction via a binomial regression. So for example, does a predictor variable (Sex, treatment, etc.) have a signifi ...
regression htqpcr written 7.5 years ago by Christopher Howerton40

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