User: Avinash S

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Avinash S40
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7 years, 3 months ago
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Posts by Avinash S

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Limma - RNA-Seq DE genes - Quantile normalized log transformed RPKM data
... Hello All, I'm trying to understand the method of differential expression analysis described in : * * *Stem cell transcriptome profiling via massive-scale mRNA sequencing* *Nicole Cloonan et al* *NATURE METhODS | VOL.5 NO.7 | JULY 2008 | 613* http://www.nature.com/nmeth/journal/v5/n7/abs/nmeth.1223 ...
limma written 7.3 years ago by Avinash S40 • updated 21 months ago by Gordon Smyth36k
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Answer: A: edgeR - R script - results compared to DESeq
... > > Hello List, > > I'm just starting with R and wanted to analyze my data for differential > expression using edgeR. Here is the code which is working for me but I want > to check if I'm missing something as I get more number of differentially > expressed genes compared to DESe ...
written 7.3 years ago by Avinash S40
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Answer: A: edgeR - R script - results compared to DESeq
... > Hello List, > > I'm just starting with R and wanted to analyze my data for differential > expression using edgeR. Here is the code which is working for me but I want > to check if I'm missing something as I get more number of differentially > expressed genes compared to DESeq > ...
written 7.3 years ago by Avinash S40
0
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5
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906
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edgeR - R script - results compared to DESeq
... Hello List, I'm just starting with R and wanted to analyze my data for differential expression using edgeR. Here is the code which is working for me but I want to check if I'm missing something as I get more number of differentially expressed genes compared to DESeq MY Sample data GeneID C ...
edger deseq written 7.3 years ago by Avinash S40 • updated 7.3 years ago by Smith, Hilary A40

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