User: Javerjung Sandhu

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Posts by Javerjung Sandhu

<prev • 19 results • page 1 of 2 • next >
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Need to do z.test
... Dear List, I need to run z.test for a numeric vector of length around 300. How should i do that? Any help would be really appreciated. Thanks in advance. Thanks, Jung [[alternative HTML version deleted]] ...
written 7.4 years ago by Javerjung Sandhu200
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A error in GAGE analysis
... Dear list, I am getting the error listed below when i try to run the "gage" function within GAGE package: Error in rank(cns) : unimplemented type 'NULL' in 'greater' In addition: Warning message: In is.na(x) : is.na() applied to non-(list or vector) of type 'NULL' I have 1. Gene expression data cons ...
gage written 7.4 years ago by Javerjung Sandhu200 • updated 7.4 years ago by Luo Weijun1.5k
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How to output the graphs generated during edgeR analysis to pdf file
... Hi List, I just want to know how to output the graphs generated during edgeR analysis to pdf file. Any help would be really appreciated. Thanks in advance. Thanks, Jung [[alternative HTML version deleted]] ...
written 7.4 years ago by Javerjung Sandhu200 • updated 7.4 years ago by Sermsawat Tunlaya-anukit90
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Comment: C: Few errors with edgeR
... Hi Mark & list, Yes i do want to submit my own set of P values and get the genes which pass that cut off values only (probably using topTags function in edgeR) Thanks, Jung ...
written 7.4 years ago by Javerjung Sandhu200
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Few errors with edgeR
... Dear List, I am getting few errors while running edgeR and would like to know few things too as i am novice to edgeR and R. My errors and questions are as follows: 1. I am getting an error "could not find function plotBCV". As i am loading package edgeR and limma, I shouldn't be getting this error. ...
normalization limma edger written 7.4 years ago by Javerjung Sandhu200 • updated 7.4 years ago by Mark Robinson870
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Please help: SNP Frequency Analysis Package in Bioconductor
... Dear Sir or Madam, I am interested in using Bioconductor to analyze and compare some data I’ve recently acquired and was wondering if you could help direct me to an appropriate analysis package. I have two sets of data, from two separate groups of AML patients. One set is of 96 patients, the other ...
sequencing written 7.5 years ago by Javerjung Sandhu200 • updated 7.5 years ago by Vincent J. Carey, Jr.6.3k
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SNP Frequency Analysis Package in Bioconductor
... Dear Sir or Madam, I am interested in using Bioconductor to analyze and compare some data I’ve recently acquired and was wondering if you could help direct me to an appropriate analysis package. I have two sets of data, from two separate groups of AML patients. One set is of 96 patients, the other ...
sequencing written 7.5 years ago by Javerjung Sandhu200
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GAGE Package: Problem with probeset IDs conversion to Gene names or vice versa
... Dear list, I have gene expression data with probeset IDs & gene set data with gene names. So both gene set and expression data are not using the same gene ID system. Both gene set and expression data should use the same GENE ID system which is a requirement of the GAGE analysis. So the problem i ...
convert gage written 7.6 years ago by Javerjung Sandhu200 • updated 7.5 years ago by Luo Weijun1.5k
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GAGE Package: Problem with "Affymetrix hg u133 plus 2 probeset IDs" conversion to Gene names or vice versa
... Dear list, I have expression data with Affymetrix hg u133 plus 2 probeset IDs & gene set data with gene names. So both gene set and expression data are not using the same gene ID system. Both gene set and expression data should use the same GENE ID system which is a requirement of the GAGE analy ...
convert gage written 7.6 years ago by Javerjung Sandhu200
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Answer: A: GAGE Package: Problem with Affymetrix hg u133 plus 2 probeset IDs conversion to
... Dear list, I have expression data with Affymetrix hg u133 plus 2 probeset IDs & gene set data with gene names. So both gene set and expression data are not using the same gene ID system. Both gene set and expression data should use the same GENE ID system which is a requirement of the GAGE analy ...
written 7.6 years ago by Javerjung Sandhu200

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Popular Question 7.4 years ago, created a question with more than 1,000 views. For Few errors with edgeR

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