User: Osselaer, Steven [JRDBE Extern]

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Posts by Osselaer, Steven [JRDBE Extern]

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AnnotationDbi : makeOrgPackageFromNCBI fails for 'Oryctolagus cuniculus' (Rabbit - tax id : 9986)
... Hello, I encounter problems generating an org.Oc.eg.db using the function 'makeOrgPackageFromNCBI()' from the AnnotationDbi package version 1.18.1 (under R 2.15.1 / Bioconductor 2.10) for the organism 'Oryctolagus cuniculus' (Rabbit - NCBI taxonomy id 9986). Please, see transcript below for the ...
go annotationdbi written 6.9 years ago by Osselaer, Steven [JRDBE Extern]40 • updated 6.9 years ago by Marc Carlson7.2k
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Comment: C: affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
... Thank you for this information, James. We will look into this and try start using 'oligo' for these types of arrays. Kind regards, Steven -----Original Message----- From: James W. MacDonald [mailto:jmacdon@med.umich.edu] Sent: Tuesday, 24 January 2012 15:18 To: Osselaer, Steven [JRDBE Extern] Cc: ...
written 7.5 years ago by Osselaer, Steven [JRDBE Extern]40
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Comment: C: affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
... Thanks a lot, Mike. Applying the patch makes the ReadAffy() call functional again for these types of chips. Kind regards, Steven Osselaer From: Mike Smith [mailto:grimbough@gmail.com] Sent: Tuesday, 24 January 2012 14:30 To: Osselaer, Steven [JRDBE Extern] Cc: bioconductor@r-project.org Subj ...
written 7.5 years ago by Osselaer, Steven [JRDBE Extern]40
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Comment: C: affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
... Dear Wolfgang, I was under the impression that it was a problem with the software as I can read the same CEL files with the R 2.13.1 software : see transcript for the same code but run under R 2.13.1 below. Kind regards, Steven R version 2.13.1 (2011-07-08) Copyright (C) 2011 The R Foundation for ...
written 7.5 years ago by Osselaer, Steven [JRDBE Extern]40

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