User: Vladimir Krasikov

Reputation:
90
Status:
Trusted
Location:
Last seen:
2 days, 22 hours ago
Joined:
5 years, 4 months ago
Email:
v***********@gmail.com

Posts by Vladimir Krasikov

<prev • 15 results • page 1 of 2 • next >
0
votes
2
answers
117
views
2
answers
Comment: C: Samples without pair in paired design experiment
... Thanks a lot Gordon for clarification of this point. ...
written 25 days ago by Vladimir Krasikov90
0
votes
2
answers
117
views
2
answers
Comment: C: Samples without pair in paired design experiment
... Michael, thanks a lot for an explanation. However DE genes set slightly differs from running DESeq on complete data set, where not paired samples should be discarded automatically (as Gordon Smyth said below), from the DE genes set I obtained when discard not-paired samples manually from experimenta ...
written 25 days ago by Vladimir Krasikov90
3
votes
2
answers
117
views
2
answers
Samples without pair in paired design experiment
... Dear Experts! I am analyzing RNASeq data of 18 paired samples (before and after treatment) in frame of DESeq2 pipeline. In the set some of the pairs are not complete by technical reasons. I am using straightforward design : model.matrix(~ Ind +Treatment, Exp.Design) ... So the question is should ...
deseq2 paired samples written 27 days ago by Vladimir Krasikov90 • updated 25 days ago by Gordon Smyth30k
0
votes
1
answers
137
views
1
answers
Comment: C: Complicated paired multi factor design
... Now if I want to add to the experiment another compound (Comp3), how can I extract genes responded differently to the Comp2 and Comp3 related to the Comp1 in first Phenotype? ...
written 4 weeks ago by Vladimir Krasikov90
0
votes
1
answers
137
views
1
answers
Comment: C: Complicated paired multi factor design
... Thanks a lot, this is what I expected ...
written 5 weeks ago by Vladimir Krasikov90
0
votes
1
answers
137
views
1
answers
Comment: C: Complicated paired multi factor design
... I updated initial post to reflect what comparisons I am interested in ...
written 5 weeks ago by Vladimir Krasikov90
2
votes
1
answer
137
views
1
answer
Complicated paired multi factor design
... Hello Experts! I encountered somewhat difficult experimental design. Briefly, blood cells from 2 individuals where treated with 2 different compounds (this compounds supposedly have to force cells switch their type from Phen1 to Phen2). Afterwards cells of different phenotypes were physically sepa ...
deseq2 multiple factor design written 5 weeks ago by Vladimir Krasikov90
0
votes
2
answers
481
views
2
answers
Comment: C: arrayQualityMetrics package - bugs and errors
... Dear Wolfgang Thanks a lot for your advises. Bellow I provide error messages for my case On Wed, 15 Feb 2012 19:42:27 +0100, Wolfgang Huber wrote: > Dear Vladimir > > Thank you for the feedback and the detailed descriptions. > > To remove the reason for the warning from KernSmooth ...
written 5.4 years ago by Vladimir Krasikov90
0
votes
5
answers
501
views
5
answers
Answer: A: Limma: questions about data pre-processing
... Dear Axel Anyway thanks a lot for your efforts, and I sorry if that took too much time I will try to communicate with the company to get row and column coordinates, however earlier they refused to provide me with FE files, so chances are low. Regards Vladimir On Wed, 15 Feb 2012 19:31:55 +0100, ...
written 5.4 years ago by Vladimir Krasikov90
0
votes
2
answers
481
views
2
answers
Comment: C: arrayQualityMetrics package - bugs and errors
... Thanks Martin It fixes the installation problem Vladimir On Wed, 15 Feb 2012 15:40:09 +0100, Martin Morgan wrote: > On 02/15/2012 04:44 AM, Vladimir Krasikov wrote: >> Dear list >> >> While trying to analyze my data with arrayQualityMetrics (thanks to >> Axel Klenk fo ...
written 5.4 years ago by Vladimir Krasikov90

Latest awards to Vladimir Krasikov

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 270 users visited in the last hour