User: Vladimir Krasikov

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Posts by Vladimir Krasikov

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Comment: C: Complicated paired multi factor design
... Thanks a lot, this is what I expected ...
written 5 days ago by Vladimir Krasikov80
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Comment: C: Complicated paired multi factor design
... I updated initial post to reflect what comparisons I am interested in ...
written 5 days ago by Vladimir Krasikov80
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Complicated paired multi factor design
... Hello Experts! I encountered somewhat difficult experimental design. Briefly, blood cells from 2 individuals where treated with 2 different compounds (this compounds supposedly have to force cells switch their type from Phen1 to Phen2). Afterwards cells of different phenotypes were physically sepa ...
deseq2 multiple factor design written 6 days ago by Vladimir Krasikov80
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Comment: C: arrayQualityMetrics package - bugs and errors
... Dear Wolfgang Thanks a lot for your advises. Bellow I provide error messages for my case On Wed, 15 Feb 2012 19:42:27 +0100, Wolfgang Huber wrote: > Dear Vladimir > > Thank you for the feedback and the detailed descriptions. > > To remove the reason for the warning from KernSmooth ...
written 5.3 years ago by Vladimir Krasikov80
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Answer: A: Limma: questions about data pre-processing
... Dear Axel Anyway thanks a lot for your efforts, and I sorry if that took too much time I will try to communicate with the company to get row and column coordinates, however earlier they refused to provide me with FE files, so chances are low. Regards Vladimir On Wed, 15 Feb 2012 19:31:55 +0100, ...
written 5.3 years ago by Vladimir Krasikov80
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Comment: C: arrayQualityMetrics package - bugs and errors
... Thanks Martin It fixes the installation problem Vladimir On Wed, 15 Feb 2012 15:40:09 +0100, Martin Morgan wrote: > On 02/15/2012 04:44 AM, Vladimir Krasikov wrote: >> Dear list >> >> While trying to analyze my data with arrayQualityMetrics (thanks to >> Axel Klenk fo ...
written 5.3 years ago by Vladimir Krasikov80
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arrayQualityMetrics package - bugs and errors
... Dear list While trying to analyze my data with arrayQualityMetrics (thanks to Axel Klenk for the advise to use it) first on PC and now on MAC. I realize that it is can't run at all on MAC, while on PC it does work, although not as described (or at least not all features described in the vignette ar ...
limma affyplm arrayqualitymetrics written 5.3 years ago by Vladimir Krasikov80 • updated 5.3 years ago by Wolfgang Huber13k
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Answer: A: Limma: questions about data pre-processing
... Dear Axel Thanks for all your explanations and efforts. After your advise to use arrayQualityMetrics package to build a report covering all arrays, I'm exploring its possibilities and find it is indeed produce really nice intuitive report. Q2. Here is one of the arrays link: http://db.tt/ICfiVlUt ...
written 5.3 years ago by Vladimir Krasikov80
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Answer: A: Limma: questions about data pre-processing
... Dear Axel Once again thanks... Q2: The only thing I know now is that it was rather new Agilent edition of March 2011, however our company stripped away all information in files ( even removed all control spots). Do you think there is still a way to make visualizations? Q5: After reading Rquantil ...
written 5.3 years ago by Vladimir Krasikov80
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Answer: A: Limma: questions about data pre-processing
... Dear Axel, Thanks a lot for the info. > Dear Vladimir, > > I'll only answer or comment on some of your questions and leave > the others for the true experts... > > Q2: yes, for example using package arrayQualityMetrics, if you know > the array layout. FES output usually conta ...
written 5.3 years ago by Vladimir Krasikov80

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