User: Ahmet ZEHIR

gravatar for Ahmet ZEHIR
Ahmet ZEHIR50
Reputation:
50
Status:
New User
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Last seen:
7 years, 5 months ago
Joined:
7 years, 8 months ago
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a*********@gmail.com

Posts by Ahmet ZEHIR

<prev • 5 results • page 1 of 1 • next >
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Comment: C: DEXSeq package: Error in DEXSeqHTML
... oh, I just typed this: source("http://bioconductor.org/biocLite.R") biocLite("DEXSeq") It installed 1.0.2 again. I'll download the updated version and install it manually but something might be broken there. (I check for package updates frequently and DEXSeq never updated there either) Ahme ...
written 7.4 years ago by Ahmet ZEHIR50
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Comment: C: DEXSeq package: Error in DEXSeqHTML
... Dear Alejandro, I think back in the day I installed DEXSeq through NCI's mirror and it seems like the package is not updated there. I'm assuming that's why I missed the updates (here 1.0.2 is cited as the current version: http://watson.nci.nih.gov/bioc_mirror/packages/2.9/bioc/html/DEXSeq.ht ml) I ...
written 7.4 years ago by Ahmet ZEHIR50
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DEXSeq package: Error in DEXSeqHTML
... Dear list, I am using DEXseq to look at differential exon usage and everything seems to work just fine. When I want to create an HTML report however, I get the following error: > DEXSeqHTML(ecsA673vshMSC, FDR = 0.001, color = c("#FF000080", "#0000FF80")) Error in plot.new() : figure margins too ...
dexseq written 7.4 years ago by Ahmet ZEHIR50 • updated 7.4 years ago by Alejandro Reyes1.7k
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Illumina beadarray analysis with lumi
... Hello, I've been asked to analyze a small set of illumina beadarray microarray data. This is my first time dealing with beadarray data and I'm trying to use lumi for the analysis. I've asked them to send me the data exported from BeadStudio as explained in the lumi manual. here's how it looks: Tar ...
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survival prediction from multiple genes
... Hello, I've been using the survival package to determine whether a gene's expression can be used in prediction of survival probabilities a while now using the CDGSR package to pull TCGA data. However, now that I've been thinking about using multiple genes' expression to stratify patients, I'm a bit ...
survival ovarian written 7.7 years ago by Ahmet ZEHIR50

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Popular Question 7.4 years ago, created a question with more than 1,000 views. For survival prediction from multiple genes

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