User: zeynep özkeserli

Reputation:
140
Status:
Trusted
Location:
Turkey
Website:
http://ribosomenews.wo...
Last seen:
2 years, 11 months ago
Joined:
5 years, 7 months ago
Email:
z***************@gmail.com

Studied statistics to become a bioinformatician, then studied bioinformatics at Ankara University Biotechnology Institute. Loves learning, adores wetlab, believes in good data :o) Is not good at short bios. Cheers!

Posts by zeynep özkeserli

<prev • 15 results • page 1 of 2 • next >
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News: ISCBSC RSG Turkey Organises Webinars!
... ISCB RSG-TURKEY is proud to announce 2014's last webinar organised as a part of our Bioinfonet Project. Bioinfonet project is an ISCB Student Council supported webinar project. Our main aim is to build bridges between bioinformatics professionals and young bioinformatics students, mainly who live in ...
news bioinformatics webinar written 2.9 years ago by zeynep özkeserli140
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Answer: A: CHARM qcReport Question
... Hi All, I think I have to add these too to my previous message about qcReport error. After getting the error, I tried to go on and try next steps. I was able to get the control Indexes but again got an error message at controlQC step: cqc<- controlQC(rawData=rawData, controlIndex= ctrlIdx, ID ...
written 3.6 years ago by zeynep özkeserli140
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CHARM qcReport Question
... Hi all (and if any chance, Dr. Aryee), I am working with 112 (56 532, 56 635) NimbleGen Promoter Medip arrays to perform a CHARM analysis. First of all, I wanted to obtain the qc values and have a qcReport but I get this error message: Error in plot.window(...) : need finite 'xlim' values My cod ...
charm written 3.6 years ago by zeynep özkeserli140
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Comment: C: Data file request
... Hi Prabhakar, You can try this one from GEO: http://0-www.ncbi.nlm.nih.gov.elis.tmu.edu.tw/geo/query/acc.cgi?acc=GS E33437 Hope it helps, Best, Zeynep On Mon, Mar 24, 2014 at 9:16 PM, Steve Lianoglou wrote: > Hi, > > On Mon, Mar 24, 2014 at 12:09 PM, prabhakar ghorpade > wrote: & ...
written 3.7 years ago by zeynep özkeserli140
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Charm Error - methp
... Dear group, I am trying to perform Charm analysis on a dataset consisted of 24 two channel NimbleGen Promoter Medip Arrays. Our data represent same patients' methylation levels before and after treatment so it is a paired design. My problem is, getting an error which I don't understand and don't k ...
charm written 4.5 years ago by zeynep özkeserli140
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Comment: C: introductory book
... I agree with James. It would be beneficial to start with an introductory R book if you are not an R user already. When you learn the basic steps, you can then start to understand what is going on in sample codes and also in vignettes. On Sat, Mar 23, 2013 at 4:14 PM, James W. MacDonald wrote: &g ...
written 4.7 years ago by zeynep özkeserli140
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Comment: C: Question about interpretation of CHARM results
... No Tim, it was important. Thank you again. On Fri, Aug 17, 2012 at 8:00 PM, Tim Triche, Jr. wrote: > Good grief, I really need to avoid responding to emails before I have my > morning coffee. > > --t > > On Aug 17, 2012, at 9:26 AM, zeynep özkeserli > wrote: > > Dear T ...
written 5.3 years ago by zeynep özkeserli140
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Comment: C: Question about interpretation of CHARM results
... Dear Tim, Thank you for your answer. But to my understanding, if I could get this answer by undoing the logit function (I tought you were doing this), we should use inverse logit function. Which is exp(x)/(1+exp(x)) And in my case it gives: > exp(-0.30427)/(1+exp(-0.30427)) [1] 0.424514 Ok, t ...
written 5.3 years ago by zeynep özkeserli140
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Question about interpretation of CHARM results
... Dear All, Dear Dr. Aryee and Dr. Carvalho, I have a question on interpreting the results of dmrFinder function. We have performed a CHARM analysis on the data we got from NimbleGen Promoter Medip Arrays. The data is obtained from each patient before and after treatment. And after performing CHARM ...
charm written 5.3 years ago by zeynep özkeserli140 • updated 5.3 years ago by Andrew Jaffe120
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Comment: C: Limma Design for Paired Samples Question
... Dear Gordon, Thank you very much for your kind, fast and detailed answer. I performed the limma analysis following your suggestions, without any problems and I think we've got some meaningful results. But at this point, I have another question regarding to sample size. I don't know if it is conveni ...
written 5.3 years ago by zeynep özkeserli140

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Popular Question 2.9 years ago, created a question with more than 1,000 views. For Limma Design for Paired Samples Question
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