User: R Tagett

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R Tagett30
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6 years, 1 month ago
Joined:
7 years, 4 months ago
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r**@wayne.edu

Posts by R Tagett

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bioMart GO inconsistency, normal?
... Hello, I am a graduate student at Wayne State University in Detroit. I am running BioMart to collect GO terms for lists of genes and I noticed that some genes are annotated with top nodes (eg "biological_process") and others are not. I wonder if any one can tell me why. An example code and my sessi ...
go biomart written 6.1 years ago by R Tagett30
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Comment: C: normalize.AffyBatch.vsn with reference vsn object
... Hi Wolfgang, Thanks for your response. I found the problem thanks to looking into your suggestion. It is not because of the subsampling argument in the vsn2 call. It is because the affybatch and the reference fit sent to normalize.AffyBatch.vsn both contain all pm and mm probes, but inside the funct ...
written 7.4 years ago by R Tagett30
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normalize.AffyBatch.vsn with reference vsn object
... Hello, I am trying to normalize an affybatch (U133plus2) against a reference set (all U133plus2) using normalize.AffyBatch.vsn(abatch, reference, ...) according to the vignette where the reference is a vsn object from a previous fit and abatch is an affybatch, but the objects do not seem compatible. ...
vsn written 7.4 years ago by R Tagett30 • updated 7.4 years ago by Wolfgang Huber13k

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