User: Rainy Gorilla

gravatar for Rainy Gorilla
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Netherlands
Last seen:
9 months, 3 weeks ago
Joined:
7 years, 5 months ago
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Posts by Rainy Gorilla

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Not full rank design using Deseq2
... Dear all, I have count data from healthy and diseased patients. I have 6 healthy samples vs 14 samples. The diseased patient underwent different treatment types and had biomarkers measured. Because the healthy doner did not undergo any treatment and were not measured for biomarkers I have problems ...
deseq2 counts design written 4.7 years ago by Rainy Gorilla20 • updated 4.7 years ago by Michael Love25k
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How to explain lumi expression values
... Hi All, I need some clarification for the sake of explaining to my PI (even though I read the documentation on the lumi/limma/beadarray packages I'm still not completely clear as to how to explain this). I have my Illumina expression data and the range of the log2 transformed expression values fal ...
written 5.5 years ago by Rainy Gorilla20 • updated 5.5 years ago by Gordon Smyth39k
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Limma, design matrix, lmfit Coefficients not estimable error
... Dear List, The experiment I have has the following description table: Treatment SampelingPoint Subjects SampleNames placebo_20 20 1 placebo_20_01 placebo_22 22 1 placebo_22_01 celltype2_20 20 2 celltype2_20_02 celltype2_22 22 2 celltype2_22_02 celltype2_20 20 3 celltype2_20_03 celltype2_22 22 3 ce ...
limma written 7.4 years ago by Rainy Gorilla20

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Popular Question 9 months ago, created a question with more than 1,000 views. For Not full rank design using Deseq2

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