User: Thomas Maurel

gravatar for Thomas Maurel
Thomas Maurel700
Reputation:
700
Status:
Trusted
Location:
United Kingdom
Last seen:
2 months ago
Joined:
5 years, 6 months ago
Email:
m*****@ebi.ac.uk

Bioinformatician - Ensembl Production Team

European Bioinformatics Institute (EMBL-EBI)

European Molecular Biology Laboratory

Wellcome Trust Genome Campus

Hinxton

Cambridge CB10 1SD

United Kingdom

Posts by Thomas Maurel

<prev • 111 results • page 1 of 12 • next >
1
vote
0
answers
352
views
0
answers
News: Ensembl 90 has been released
... Dear all The new Ensembl marts for release 90 are now live on www.ensembl.org. If you are using biomaRt, you can change your host to access our most recent data: ensembl_mart_90 <- useEnsembl(biomart=“ensembl") Ensembl Genes 90 Addition of new rodents, Mus Caroli, Pahari and Spretus Addi ...
biomart news ensembl release ensembl90 written 3 months ago by Thomas Maurel700
1
vote
0
answers
166
views
0
answers
News: Ensembl 89 has been released
... Dear all The new Ensembl marts for release 89 are now live on www.ensembl.org. If you are using biomaRt, you can change your host to access our most recent data: ensembl_mart_89 <- useEnsembl(biomart=“ensembl")   Ensembl Genes 89    Updated Microarray probes/probesets for all the species   ...
biomart news ensembl ensemblbiomart ensembl89 written 5 months ago by Thomas Maurel700
0
votes
2
answers
489
views
2
answers
Comment: C: Inconsistencies in biomart results
... That's great news, thanks a lot for implementing this Mike. Kind Regards, Thomas ...
written 6 months ago by Thomas Maurel700
0
votes
4
answers
326
views
4
answers
Comment: C: BiomaRt package not working
... Opps sorry, you are right. I've added "go_accession -> go_id" to the file.  Thanks, Thomas ...
written 6 months ago by Thomas Maurel700
0
votes
4
answers
326
views
4
answers
Comment: C: BiomaRt package not working
... Dear Mike, Thanks a lot for spotting this. I've now updated the following file: ftp://ftp.ensemblgenomes.org/pub/release-35/release_35_biomart_changes.txt Kind Regards, Thomas ...
written 6 months ago by Thomas Maurel700
0
votes
1
answers
527
views
1
answers
Comment: C: biomaRt error when connecting to host
... Dear All, Everything should be back to normal now.  Thanks a lot for your patience. Kind Regards, Thomas ...
written 7 months ago by Thomas Maurel700
0
votes
1
answers
527
views
1
answers
Comment: C: biomaRt error when connecting to host
... Dear all, I am afraid that we are experiencing some issues with our marts since yesterday's maintenance.  We are aiming to fix the issue as soon as possible. Apologies for any inconvenience caused, Kind Regards, Thomas ...
written 7 months ago by Thomas Maurel700
0
votes
1
answers
278
views
1
answers
Answer: A: Retriving Annotation for HTA2.0 using biomRt
... Hello, You can either retrieve all the Affymetrix HTA2.0 mapped to the Ensembl Transcript IDs using "with_affy_hta_2_0" as follow: genes <- getBM(attributes = c("affy_hta_2_0", "ensembl_gene_id","ensembl_transcript_id","external_gene_name","entrezgene", "gene_biotype","transcript_biotype", "go ...
written 7 months ago by Thomas Maurel700
0
votes
2
answers
335
views
2
answers
Answer: A: biomaRt does not return entrezgene id
... Dear all,   Just to let you know that the Ensembl mirrors have now been fixed.   Thanks a lot for your patience. Kind Regards, Thomas ...
written 7 months ago by Thomas Maurel700
0
votes
2
answers
335
views
2
answers
Answer: A: biomaRt does not return entrezgene id
... Dear All, I am afraid that all our Ensembl mirrors have reverted back this afternoon to how they were few days ago. We are looking into this, please use www.ensembl.org in the meantime. I will let you know once everything is working again.   Apologies for any inconvenience caused. Kind Regards ...
written 7 months ago by Thomas Maurel700

Latest awards to Thomas Maurel

Scholar 7 months ago, created an answer that has been accepted. For A: how to use biomaRt with ensembl build 37
Centurion 7 months ago, created 100 posts.
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: biomaRt: no access to Ensembl_75 (GRCh37.p13)
Scholar 19 months ago, created an answer that has been accepted. For A: how to use biomaRt with ensembl build 37
Appreciated 2.4 years ago, created a post with more than 5 votes. For Ensembl release 80 is out!
Teacher 2.4 years ago, created an answer with at least 3 up-votes. For A: how to use biomaRt with ensembl build 37
Appreciated 2.5 years ago, created a post with more than 5 votes. For Ensembl release 80 is out!
Teacher 3.1 years ago, created an answer with at least 3 up-votes. For A: how to use biomaRt with ensembl build 37
Scholar 3.1 years ago, created an answer that has been accepted. For A: how to use biomaRt with ensembl build 37
Autobiographer 3.1 years ago, has more than 80 characters in the information field of the user's profile.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 360 users visited in the last hour