User: Thomas Maurel

gravatar for Thomas Maurel
Thomas Maurel740
Reputation:
740
Status:
Trusted
Location:
United Kingdom
Last seen:
1 month, 1 week ago
Joined:
6 years, 4 months ago
Email:
m*****@ebi.ac.uk

Bioinformatician - Ensembl Production Team

European Bioinformatics Institute (EMBL-EBI)

European Molecular Biology Laboratory

Wellcome Trust Genome Campus

Hinxton

Cambridge CB10 1SD

United Kingdom

Posts by Thomas Maurel

<prev • 116 results • page 1 of 12 • next >
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Comment: C: Ensembl bacteria not accessible from biomaRt
... Hello, As Dan Staines mentioned above: https://support.bioconductor.org/p/82585/#82586, I am afraid that we don't provide a Bacteria mart anymore. We are still working on an alternative to provide the data and we will advertise it when available. Kind Regards, Thomas ...
written 5 weeks ago by Thomas Maurel740
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News: Ensembl 92 has been released
... Dear all The new Ensembl marts for release 92 are now live on www.ensembl.org. If you are using biomaRt, you can change your host to access our most recent data: ensembl_mart_92 <- useEnsembl(biomart=“ensembl") You can find the complete list of the changes at http://www.ensembl.org/info/webs ...
biomart news ensembl release ensembl92 written 5 months ago by Thomas Maurel740
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Comment: C: ENSEMBL causing issues replicating previous results
... Just to confirm that we do not update the Ensembl archive sites as they are snapshots of a given release. Kind Regards, Thomas ...
written 9 months ago by Thomas Maurel740
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Comment: C: Biomart getLDS error
... I am afraid this is a different problem, Mike has fixed it and the fix should be propagated in the coming days: https://support.bioconductor.org/p/104025/#104043 Kind Regards, Thomas ...
written 9 months ago by Thomas Maurel740
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Answer: A: biomaRt: drerio_gene_ensembl dataset missing
... There seems to be an issue with the new Ensembl gene mart 91 and the BiomaRt module. We are investigating with Mike Smith. Apologies for any inconvenience caused. ...
written 9 months ago by Thomas Maurel740
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News: Ensembl 90 has been released
... Dear all The new Ensembl marts for release 90 are now live on www.ensembl.org. If you are using biomaRt, you can change your host to access our most recent data: ensembl_mart_90 <- useEnsembl(biomart=“ensembl") Ensembl Genes 90 Addition of new rodents, Mus Caroli, Pahari and Spretus Addi ...
biomart news ensembl release ensembl90 written 13 months ago by Thomas Maurel740
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News: Ensembl 89 has been released
... Dear all The new Ensembl marts for release 89 are now live on www.ensembl.org. If you are using biomaRt, you can change your host to access our most recent data: ensembl_mart_89 <- useEnsembl(biomart=“ensembl")   Ensembl Genes 89    Updated Microarray probes/probesets for all the species   ...
biomart news ensembl ensemblbiomart ensembl89 written 15 months ago by Thomas Maurel740
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Comment: C: Inconsistencies in biomart results
... That's great news, thanks a lot for implementing this Mike. Kind Regards, Thomas ...
written 16 months ago by Thomas Maurel740
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Comment: C: BiomaRt package not working
... Opps sorry, you are right. I've added "go_accession -> go_id" to the file.  Thanks, Thomas ...
written 17 months ago by Thomas Maurel740
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Comment: C: BiomaRt package not working
... Dear Mike, Thanks a lot for spotting this. I've now updated the following file: ftp://ftp.ensemblgenomes.org/pub/release-35/release_35_biomart_changes.txt Kind Regards, Thomas ...
written 17 months ago by Thomas Maurel740

Latest awards to Thomas Maurel

Appreciated 5 months ago, created a post with more than 5 votes. For A: biomaRt: no access to Ensembl_75 (GRCh37.p13)
Popular Question 15 months ago, created a question with more than 1,000 views. For Ensembl release 81 is out!
Popular Question 15 months ago, created a question with more than 1,000 views. For Ensembl release 84 is out!
Scholar 17 months ago, created an answer that has been accepted. For A: how to use biomaRt with ensembl build 37
Centurion 17 months ago, created 100 posts.
Teacher 2.4 years ago, created an answer with at least 3 up-votes. For A: biomaRt: no access to Ensembl_75 (GRCh37.p13)
Scholar 2.4 years ago, created an answer that has been accepted. For A: how to use biomaRt with ensembl build 37
Appreciated 3.2 years ago, created a post with more than 5 votes. For Ensembl release 80 is out!
Teacher 3.2 years ago, created an answer with at least 3 up-votes. For A: how to use biomaRt with ensembl build 37
Appreciated 3.3 years ago, created a post with more than 5 votes. For Ensembl release 80 is out!
Teacher 3.9 years ago, created an answer with at least 3 up-votes. For A: how to use biomaRt with ensembl build 37
Scholar 3.9 years ago, created an answer that has been accepted. For A: how to use biomaRt with ensembl build 37
Autobiographer 3.9 years ago, has more than 80 characters in the information field of the user's profile.

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