User: Thomas Maurel

gravatar for Thomas Maurel
Thomas Maurel550
Reputation:
550
Status:
Trusted
Location:
United Kingdom
Last seen:
1 day, 17 hours ago
Joined:
4 years, 8 months ago
Email:
m*****@ebi.ac.uk

Bioinformatician - Ensembl Production Team

European Bioinformatics Institute (EMBL-EBI)

European Molecular Biology Laboratory

Wellcome Trust Genome Campus

Hinxton

Cambridge CB10 1SD

United Kingdom

Posts by Thomas Maurel

<prev • 90 results • page 1 of 9 • next >
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Comment: C: adding attributes affects number of results returned
... Dear Mike, You are right, rs368991480 don't have any associated phenotypes so we can't bring in ENSG00000175445 associated gene name. Regarding the issue with rs368991480 being dropped from the result, I changed the way we generate our phenotype table so for our next release (e!88), you will get so ...
written 2 days ago by Thomas Maurel550
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Answer: A: adding attributes affects number of results returned
... Hi Mike, Oh I see sorry, I got confused with an other associated gene name attribute. I guess what I gave above is a temporary solution then ;-). Yes, this look like a bug from our side, rs368991480 seems to be missing from our BioMart phenotype table. I will investigate and see if we can get it f ...
written 7 days ago by Thomas Maurel550
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Comment: C: adding attributes affects number of results returned
... Dear Mike, I had a look on the Ensembl biomart Interface and I get a different behaviour than what you have reported below with the biomaRt package. If I filter on the following variants rs368991480,rs1082714,rs1085093 and ask for the refsnp_id and ensembl_gene_stable_id attributes, I get the thre ...
written 7 days ago by Thomas Maurel550
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Answer: A: biomaRt - rice genes database not working
... Dear Maia, You will need to connect to the Ensembl plants marts to be able to query Rice: > listMarts(host="plants.ensembl.org") biomart version 1 plants_mart Plant Mart 2 plants_variations Plant Variation Mart > gramene = useMart("plants_mart", dat ...
written 12 weeks ago by Thomas Maurel550
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Answer: A: Biomart getLDS error
... Just to let you know that the US West, US East and Asian mirrors have now been fixed too. Thank you for your patience. Best Regards, Thomas ...
written 3 months ago by Thomas Maurel550
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Answer: A: Error in biomaRt User Guide example Task 11
... Dear all, Just to let you know that the US West, US East and Asian mirrors have now been fixed too. Thank you for your patience. Best Regards, Thomas ...
written 3 months ago by Thomas Maurel550
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Answer: A: biomaRt error while querying homo sapien structural variants
... Dear all, Just to let you know that the US West, US East and Asian mirrors have now been fixed too. Thank you for your patience. Best Regards, Thomas   ...
written 3 months ago by Thomas Maurel550
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Answer: A: Biomart getLDS error
... Just to let you know that we have now pushed a fix to our main website www.ensembl.org, you can access it by running: human <- useMart("ENSEMBL_MART_ENSEMBL", dataset = "hsapiens_gene_ensembl", host = "www.ensembl.org") or human = useMart("ensembl", dataset = "hsapiens_gene_ensembl")  We will f ...
written 3 months ago by Thomas Maurel550
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Answer: A: Error in biomaRt User Guide example Task 11
... Dear all, Just to let you know that we have now pushed a fix to our main website www.ensembl.org, you can access it by running: human <- useMart("ENSEMBL_MART_ENSEMBL", dataset = "hsapiens_gene_ensembl", host = "www.ensembl.org") or human = useMart("ensembl", dataset = "hsapiens_gene_ensembl")  ...
written 3 months ago by Thomas Maurel550
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Answer: A: biomaRt error while querying homo sapien structural variants
... Dear all, Just to let you know that we have now pushed a fix to our main website www.ensembl.org, you can access it by running: human <- useMart("ENSEMBL_MART_ENSEMBL", dataset = "hsapiens_gene_ensembl", host = "www.ensembl.org") or human = useMart("ensembl", dataset = "hsapiens_gene_ensembl")  ...
written 3 months ago by Thomas Maurel550

Latest awards to Thomas Maurel

Teacher 19 months ago, created an answer with at least 3 up-votes. For A: how to use biomaRt with ensembl build 37
Appreciated 19 months ago, created a post with more than 5 votes. For Ensembl release 80 is out!
Appreciated 20 months ago, created a post with more than 5 votes. For Ensembl release 80 is out!
Teacher 2.2 years ago, created an answer with at least 3 up-votes. For A: how to use biomaRt with ensembl build 37
Scholar 2.2 years ago, created an answer that has been accepted. For A: how to use biomaRt with ensembl build 37
Autobiographer 2.3 years ago, has more than 80 characters in the information field of the user's profile.

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