User: Thomas Maurel

gravatar for Thomas Maurel
Thomas Maurel680
Reputation:
680
Status:
Trusted
Location:
United Kingdom
Last seen:
1 day, 15 hours ago
Joined:
5 years ago
Email:
m*****@ebi.ac.uk

Bioinformatician - Ensembl Production Team

European Bioinformatics Institute (EMBL-EBI)

European Molecular Biology Laboratory

Wellcome Trust Genome Campus

Hinxton

Cambridge CB10 1SD

United Kingdom

Posts by Thomas Maurel

<prev • 109 results • page 1 of 11 • next >
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Comment: C: Inconsistencies in biomart results
... That's great news, thanks a lot for implementing this Mike. Kind Regards, Thomas ...
written 22 days ago by Thomas Maurel680
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Comment: C: BiomaRt package not working
... Opps sorry, you are right. I've added "go_accession -> go_id" to the file.  Thanks, Thomas ...
written 29 days ago by Thomas Maurel680
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Comment: C: BiomaRt package not working
... Dear Mike, Thanks a lot for spotting this. I've now updated the following file: ftp://ftp.ensemblgenomes.org/pub/release-35/release_35_biomart_changes.txt Kind Regards, Thomas ...
written 29 days ago by Thomas Maurel680
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Comment: C: biomaRt error when connecting to host
... Dear All, Everything should be back to normal now.  Thanks a lot for your patience. Kind Regards, Thomas ...
written 6 weeks ago by Thomas Maurel680
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Comment: C: biomaRt error when connecting to host
... Dear all, I am afraid that we are experiencing some issues with our marts since yesterday's maintenance.  We are aiming to fix the issue as soon as possible. Apologies for any inconvenience caused, Kind Regards, Thomas ...
written 6 weeks ago by Thomas Maurel680
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Answer: A: Retriving Annotation for HTA2.0 using biomRt
... Hello, You can either retrieve all the Affymetrix HTA2.0 mapped to the Ensembl Transcript IDs using "with_affy_hta_2_0" as follow: genes <- getBM(attributes = c("affy_hta_2_0", "ensembl_gene_id","ensembl_transcript_id","external_gene_name","entrezgene", "gene_biotype","transcript_biotype", "go ...
written 6 weeks ago by Thomas Maurel680
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Answer: A: biomaRt does not return entrezgene id
... Dear all,   Just to let you know that the Ensembl mirrors have now been fixed.   Thanks a lot for your patience. Kind Regards, Thomas ...
written 7 weeks ago by Thomas Maurel680
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Answer: A: biomaRt does not return entrezgene id
... Dear All, I am afraid that all our Ensembl mirrors have reverted back this afternoon to how they were few days ago. We are looking into this, please use www.ensembl.org in the meantime. I will let you know once everything is working again.   Apologies for any inconvenience caused. Kind Regards ...
written 7 weeks ago by Thomas Maurel680
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Comment: C: biomaRt does not return entrezgene id
... Hi Mike, I actually never realised this behaviour before. If this can be over ride in the biomaRt code that would be great. To over ride the automatic ensembl mirrors redirect, you can use the following flag in the URL: "?redirect=no". E.g: http://uswest.ensembl.org/index.html?redirect=no This sh ...
written 7 weeks ago by Thomas Maurel680
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Comment: C: Query Error: biomaRt
... Hello, The issue has now been fixed. Please let me know if you are still having problems.   Apologies for any inconvenience caused. Kind Regards, Thomas ...
written 7 weeks ago by Thomas Maurel680

Latest awards to Thomas Maurel

Scholar 7 weeks ago, created an answer that has been accepted. For A: how to use biomaRt with ensembl build 37
Centurion 7 weeks ago, created 100 posts.
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: biomaRt: no access to Ensembl_75 (GRCh37.p13)
Scholar 13 months ago, created an answer that has been accepted. For A: how to use biomaRt with ensembl build 37
Appreciated 23 months ago, created a post with more than 5 votes. For Ensembl release 80 is out!
Teacher 23 months ago, created an answer with at least 3 up-votes. For A: how to use biomaRt with ensembl build 37
Appreciated 2.0 years ago, created a post with more than 5 votes. For Ensembl release 80 is out!
Teacher 2.6 years ago, created an answer with at least 3 up-votes. For A: how to use biomaRt with ensembl build 37
Scholar 2.6 years ago, created an answer that has been accepted. For A: how to use biomaRt with ensembl build 37
Autobiographer 2.6 years ago, has more than 80 characters in the information field of the user's profile.

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