User: Karl Lundén

gravatar for Karl Lundén
Karl Lundén20
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Posts by Karl Lundén

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makeTxDbFromGFF errors too many NAs and make.splicings
...   Hi, Im trying to make TxDb objects for some GFF3-files of Picea abies from Congenie. Can you see any obvious reason why there are errors ? Are the GFF3 -files not compatible with the makeTxDbFromGFF or are there some updates needed ? Kind regards Karl   > MYBtestTxDb<-makeTxDbFromGFF(" ...
limma maketxdbfromgff written 16 days ago by Karl Lundén20 • updated 7 days ago by Hervé Pagès ♦♦ 13k
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Comment: C: DESeq estimateDispersions() problem
... Thanks! I am working on the reinstallation. Karl Jun 1, 2012 kl. 4:33 PM skrev Nicolas Delhomme: > Indeed; good catch Steve. Calling the help that way gives me a very similar error to the one you reported: > > ?estimateDispersions() > Error in .helpForCall(topicExpr, parent.frame()) : ...
written 6.4 years ago by Karl Lundén20
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DESeq estimateDispersions() problem
... Dear all, I can not get the DESeq function estimateDispersions() to function as it usually does. Have there been any recent updates in DESeq or in R that explains why estimateDispersions doesn't work? I use R on a grid engine and everything worked fine earlier this spring. Thanks Karl ============== ...
deseq written 6.4 years ago by Karl Lundén20

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