User: Ben Woodcroft

gravatar for Ben Woodcroft
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5 years, 4 months ago
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Posts by Ben Woodcroft

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SRAdb: differences between the database and the NCBI website
... Hi, I noticed that some entries in sradb do not contain the same data as I would have expected in the sra table. For instance SRR205889. In SRAmetadb.sqlite, many of the data in both the SRA and the experiment tables are null (take for example platform, which should the 'LS454'), when on the NCBI w ...
process sradb written 5.4 years ago by Ben Woodcroft40
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Answer: A: SRAdb: is the database missing some entries? (Ben Woodcroft)
... Hi Jack, Thanks for the reply and fix - you had me worried! I have big plans for this database. It seems to find data for all those that were missing (my total list is 52 accessions), except for SRA023700 - maybe this particular one was only recently released? Is there any way to tell? I notice y ...
written 5.4 years ago by Ben Woodcroft40
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Comment: C: SRAdb: is the database missing some entries?
... Thanks guys. [[alternative HTML version deleted]] ...
written 5.4 years ago by Ben Woodcroft40
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SRAdb: is the database missing some entries?
... Hi, Firstly thanks to the creators of this very useful package. I've come across SRA identifiers that don't appear to be in the database (a minority, but still). Here's a few: SRA036600 DRX001436 SRA049463 ERA062401 ERA062401 For example: > library(SRAdb) > sra_con = dbConnect(SQLite(),'SR ...
written 5.5 years ago by Ben Woodcroft40 • updated 5.5 years ago by Sean Davis21k

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