User: Xin Yang

gravatar for Xin Yang
Xin Yang30
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30
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New User
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Last seen:
7 years, 1 month ago
Joined:
7 years, 1 month ago
Email:
x*******@cimr.cam.ac.uk

Posts by Xin Yang

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Comment: C: Problems in retrieving 3'UTR sequences of ALL human genes using biomaRt
... Hi Tengfei, Thanks a lot! autoplot(BamFile(bamfile), which=genesymbol["IFIH1"],method = "raw") generated the plot successfully , while library(Rsamtools) length(biovizBase:::fetch(BamFile(bamfile), which = genesymbol["IFIH1"])) yields no plot. Besides, may I ask whether ggbio can plot gtf file? ...
written 7.1 years ago by Xin Yang30
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Comment: C: Problems in retrieving 3'UTR sequences of ALL human genes using biomaRt
... Hi Tengfei, Thanks a lot for your reply. Here is my session Info(): > sessionInfo() R version 2.15.0 (2012-03-30) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8 [5] LC_MONETARY=en_GB. ...
written 7.1 years ago by Xin Yang30
0
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1
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948
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Comment: C: Problems in retrieving 3'UTR sequences of ALL human genes using biomaRt
... Dear members, I'm using ggbio to get some coverage plot for bam files and I did: > autoplot(bamfile, which=genesymbol["IFIH1"],method = "raw") reading in as Bamfile Error in .local(data, ...) : method 'raw' require which argument It seems the "which" argument doesn't work and I checked the ...
written 7.1 years ago by Xin Yang30

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