User: Nicolas Delhomme

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6 years, 2 months ago
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6 years, 11 months ago
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n***************@plantphys.umu.se

Posts by Nicolas Delhomme

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Answer: A: it is strange that I cannot get the fpkm by using easyRNASeq
... Dear Fuyan, No worries. You seem to have put the finger on a bug, I'll check that out. A new version of R and Bioc is available and any change I would do would go into that new version (will be 1.6.1 then). As we discussed offline, remember that easyRNASeq won't give you FPKM sensus-stricto. What ...
written 6.2 years ago by Nicolas Delhomme30
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Comment: C: Is there any prejudice whether to use edgeR or DESeq for differential expression
... Hi all, There are some information about performing diff. exp. analysis after aligning with RSEM on the RSEM webpage: http://deweylab.biostat.wisc.edu/rsem/README.html#de. Using EBSeq, a (non yet Bioc as far as I can tell) R package. Depending on how you ran RSEM - see there for RSEM output detail ...
written 6.6 years ago by Nicolas Delhomme30
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Why does a call to "unique" removes a DNAStringSet names?
... Hi, I've just realized that a call to unique on a DNAStringSet would result in the names slot to disappear. There's nothing about this in the documentation, but if that's the desired effect, warning about it would be good :-) Here is how to reproduce it: library(Biostrings) dset<-DNAStringSet( ...
written 6.9 years ago by Nicolas Delhomme30

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