User: Andrzej Oleś

gravatar for Andrzej Oleś
Andrzej Oleś710
Reputation:
710
Status:
Trusted
Location:
Heidelberg, Germany
Website:
https://github.com/aoles
Twitter:
andrzejkoles
Scholar ID:
Google Scholar Page
Last seen:
3 days, 2 hours ago
Joined:
5 years, 8 months ago
Email:
a***********@embl.de

Posts by Andrzej Oleś

<prev • 80 results • page 1 of 8 • next >
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Answer: A: Relabelling objects - EBImage
... Dear Mathieu, in order to re-label the specks you need to overlay the Voronoi partitions with the specks mask to extract the corresponding labels. The difficulty here is that occasionally a speckle might end up on the border of two or more partitions. You can account for such situations by assigning ...
written 22 days ago by Andrzej Oleś710
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Comment: C: Does BiocWorkflowTools package generate F1000Reseach/Bioconductor-stype PDF at o
... Actually, RStudio GUI allows you to switch between the different output formats defined in the document's YAML header. You can select them from the dropdown list which can be expanded by clicking on the small arrow next to "Knit". ...
written 23 days ago by Andrzej Oleś710
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Comment: C: Relabelling objects - EBImage
... Hi Mathieu, thank you for reaching out. Could you maybe share your files such that accessing them doesn't require setting up an account with a third-party service? Thanks! ...
written 4 weeks ago by Andrzej Oleś710
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Comment: C: How to Remove EBImage objects that have holes?
... Thank you Wolfgang for providing a solution to the problem. This is probably the way to go. Note that there is a dedicated function rmObjects to remove objects from images which is the preferred approach for performance reasons. It also provides an easy way to re-label objects such that the maximum ...
written 10 weeks ago by Andrzej Oleś710
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Comment: C: simpleRNASeq easyRNAseq warnings edgeR error
... Thanks for your patience. In order to proceed, could you maybe provide a self-contained MWE illustrating the issue? Maybe it's enough to share the .rda files referenced in your code. ...
written 5 months ago by Andrzej Oleś710
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Comment: C: simpleRNASeq easyRNAseq warnings edgeR error
... Thank you for reporting this. I will look whether there is anything which could be done on the DEFormats side to address this. I will get back to you as soon as I know more. ...
written 5 months ago by Andrzej Oleś710
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Answer: A: no floating figures with biocstyle
... There is a knitr code chunk option fig.pos meant for the purpose of controlling the placement of floats. When it is set to 'H' it will freeze the figure by unfloating it. Note the uppercase which is important because this is a special placement specifier which also requires the LaTeX package float t ...
written 8 months ago by Andrzej Oleś710
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Comment: C: no floating figures with biocstyle
... Is your source a .Rnw or a .Rmd file? ...
written 8 months ago by Andrzej Oleś710
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Comment: C: Bioconductor packages now each have a DOI.
... Another one: when are the DOIs assigned, are they available as soon as the package gets accepted and its landing page is created? ...
written 10 months ago by Andrzej Oleś710
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Comment: C: Bioconductor packages now each have a DOI.
... Does the DOI resolve to package short URL in the form http://bioconductor.org/packages/Biobase such that it can be used with packages which have been newly added to devel but haven't made it to release yet? ...
written 10 months ago by Andrzej Oleś710

Latest awards to Andrzej Oleś

Popular Question 8 weeks ago, created a question with more than 1,000 views. For Updates to BiocStyle formatting
Appreciated 12 months ago, created a post with more than 5 votes. For Updates to BiocStyle formatting
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Issue with pandoc-citeproc when rendering the f1000 article Rmd file from BiocWo
Scholar 12 months ago, created an answer that has been accepted. For A: EBImage read png causes R to crash
Supporter 12 months ago, voted at least 25 times.
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Only 1s created by erode()
Scholar 12 months ago, created an answer that has been accepted. For A: EBImage crashing in for-loop
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Only 1s created by erode()
Scholar 12 months ago, created an answer that has been accepted. For A: EBImage crashing in for-loop
Scholar 2.2 years ago, created an answer that has been accepted. For A: EBImage crashing in for-loop
Scholar 2.2 years ago, created an answer that has been accepted. For A: EBImage read png causes R to crash
Scholar 2.2 years ago, created an answer that has been accepted. For A: Not able to display actual grayscale image using EBImage
Scholar 2.2 years ago, created an answer that has been accepted. For A: reactive CellCODE heatmap
Teacher 2.2 years ago, created an answer with at least 3 up-votes. For A: Only 1s created by erode()
Scholar 2.2 years ago, created an answer that has been accepted. For A: EBImage crashing in for-loop
Scholar 2.6 years ago, created an answer that has been accepted. For A: EBImage crashing in for-loop
Scholar 3.0 years ago, created an answer that has been accepted. For A: EBImage crashing in for-loop

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