User: Andrzej Oleś

gravatar for Andrzej Oleś
Andrzej Oleś670
Reputation:
670
Status:
Trusted
Location:
EMBL Heidelberg, Germany
Website:
https://github.com/aoles
Twitter:
andrzejkoles
Scholar ID:
Google Scholar Page
Last seen:
1 week, 4 days ago
Joined:
5 years ago
Email:
a***********@embl.de

Posts by Andrzej Oleś

<prev • 74 results • page 1 of 8 • next >
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Answer: A: no floating figures with biocstyle
... There is a knitr code chunk option fig.pos meant for the purpose of controlling the placement of floats. When it is set to 'H' it will freeze the figure by unfloating it. Note the uppercase which is important because this is a special placement specifier which also requires the LaTeX package float t ...
written 11 days ago by Andrzej Oleś670
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Comment: C: no floating figures with biocstyle
... Is your source a .Rnw or a .Rmd file? ...
written 12 days ago by Andrzej Oleś670
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Comment: C: Bioconductor packages now each have a DOI.
... Another one: when are the DOIs assigned, are they available as soon as the package gets accepted and its landing page is created? ...
written 8 weeks ago by Andrzej Oleś670
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Comment: C: Bioconductor packages now each have a DOI.
... Does the DOI resolve to package short URL in the form http://bioconductor.org/packages/Biobase such that it can be used with packages which have been newly added to devel but haven't made it to release yet? ...
written 8 weeks ago by Andrzej Oleś670
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Comment: C: Bioconductor / COHCAP GitHub Update
... Did you run the git remote add command in the package root dir? I see a similar error message when I try to run a git command but I've forgotten to cd into the package directory. ...
written 9 weeks ago by Andrzej Oleś670
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Answer: A: Updates to BiocStyle formatting
... As announced previously, the style functions have been updated to the new formatting in BiocStyle version 2.5.19. Package maintainers who already use the new style (latex2, pdf_document2 or html_document2) are now encouraged to update their vignettes by stripping the trailing "2" from BiocStyle fun ...
written 9 weeks ago by Andrzej Oleś670
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Comment: C: Updates to BiocStyle formatting
... BiocStyle::html_document is Bioconductor's standard format for authoring both package vignettes and more general documents such as training materials etc. There are currently no plans on extending rmarkdown::html_vignette. ...
written 10 weeks ago by Andrzej Oleś670
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News: Updates to BiocStyle formatting
... Dear Bioconductor Developers, We would like that in the next release most of the vignettes which use BiocStyle benefit from the updated formatting introduced over the last year. For this, all BiocStyle format functions will be switched to the new style. This transition will happen on Friday, August ...
news biocstyle vignettes rmarkdown latex written 11 weeks ago by Andrzej Oleś670
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Answer: A: Duplicated author affiliations in BiocStyle-based HTML document
... Good catch Aaron! Indeed, there was a bug in the BiocStyle function parsing author affiliations, which occurred in the special case when all authors had the same number of affiliations. This is now fixed in both devel and release. ...
written 3 months ago by Andrzej Oleś670
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Comment: C: Using BiocStyle with plotly
... The actual width of BiocStyle's figures produced by the fig.wide = TRUE code chunks is 648 pixels, so you could use the rounded up value of 650 pixels. For the regular and small figures the width is 518 and 323 pixels, respectively. The height of the figures depends on their aspect ratio, with the d ...
written 3 months ago by Andrzej Oleś670

Latest awards to Andrzej Oleś

Scholar 4 months ago, created an answer that has been accepted. For A: EBImage crashing in for-loop
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Only 1s created by erode()
Scholar 18 months ago, created an answer that has been accepted. For A: reactive CellCODE heatmap
Scholar 18 months ago, created an answer that has been accepted. For A: Not able to display actual grayscale image using EBImage
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: Only 1s created by erode()
Scholar 18 months ago, created an answer that has been accepted. For A: EBImage read png causes R to crash
Scholar 18 months ago, created an answer that has been accepted. For A: EBImage crashing in for-loop
Scholar 18 months ago, created an answer that has been accepted. For A: EBImage crashing in for-loop
Scholar 23 months ago, created an answer that has been accepted. For A: EBImage crashing in for-loop
Scholar 2.3 years ago, created an answer that has been accepted. For A: EBImage crashing in for-loop

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