User: Andrzej Oleś

gravatar for Andrzej Oleś
Andrzej Oleś660
Reputation:
660
Status:
Trusted
Location:
EMBL Heidelberg, Germany
Website:
https://github.com/aoles
Twitter:
andrzejkoles
Scholar ID:
Google Scholar Page
Last seen:
1 day, 10 hours ago
Joined:
4 years, 10 months ago
Email:
a***********@embl.de

Posts by Andrzej Oleś

<prev • 70 results • page 1 of 7 • next >
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Comment: C: Bioconductor / COHCAP GitHub Update
... Did you run the git remote add command in the package root dir? I see a similar error message when I try to run a git command but I've forgotten to cd into the package directory. ...
written 2 days ago by Andrzej Oleś660
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Answer: A: Updates to BiocStyle formatting
... As announced previously, the style functions have been updated to the new formatting in BiocStyle version 2.5.19. Package maintainers who already use the new style (latex2, pdf_document2 or html_document2) are now encouraged to update their vignettes by stripping the trailing "2" from BiocStyle fun ...
written 4 days ago by Andrzej Oleś660
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Comment: C: Updates to BiocStyle formatting
... BiocStyle::html_document is Bioconductor's standard format for authoring both package vignettes and more general documents such as training materials etc. There are currently no plans on extending rmarkdown::html_vignette. ...
written 8 days ago by Andrzej Oleś660
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News: Updates to BiocStyle formatting
... Dear Bioconductor Developers, We would like that in the next release most of the vignettes which use BiocStyle benefit from the updated formatting introduced over the last year. For this, all BiocStyle format functions will be switched to the new style. This transition will happen on Friday, August ...
news biocstyle vignettes rmarkdown latex written 15 days ago by Andrzej Oleś660
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Answer: A: Duplicated author affiliations in BiocStyle-based HTML document
... Good catch Aaron! Indeed, there was a bug in the BiocStyle function parsing author affiliations, which occurred in the special case when all authors had the same number of affiliations. This is now fixed in both devel and release. ...
written 4 weeks ago by Andrzej Oleś660
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Comment: C: Using BiocStyle with plotly
... The actual width of BiocStyle's figures produced by the fig.wide = TRUE code chunks is 648 pixels, so you could use the rounded up value of 650 pixels. For the regular and small figures the width is 518 and 323 pixels, respectively. The height of the figures depends on their aspect ratio, with the d ...
written 7 weeks ago by Andrzej Oleś660
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Answer: A: Using BiocStyle with plotly
... Hi Lluís, thanks for your feedback! I had a look into sizing of plotly::ggplotly output and it seems that this is a more general issue which is present also for regular html_document format,  and not something specific to BiocStyle. The thing is that the produced output has fixed size and does not ...
written 7 weeks ago by Andrzej Oleś660
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Answer: A: EBImage cannot read .png images from Image.R
... Your description indicates a problem with either the input filename or downstream package functions calling EBImage functions. The quotation mark in the error message looks suspicious indeed, as it suggests that the filename passed to readImage wrongly contains a quotation mark, i.e. filename.png". ...
written 9 weeks ago by Andrzej Oleś660
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Answer: A: Issue with pandoc-citeproc when rendering the f1000 article Rmd file from BiocWo
... Hi Leo, there seems to be a problem with version compatibility between pandoc and pandoc-citeproc as described in the issue you linked. Apparently your pandoc-citeproc version is outdated, as on my linux machine I have a much more recent version of pandoc-citeproc 0.10.1 vs. yours 0.5 even though I ...
written 9 weeks ago by Andrzej Oleś660
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Comment: C: Error during EBImage installation
... For the record, Martin's solution applies to Debian based Linux distributions such as Ubuntu. On Red Hat Linux (e.g. Fedora) the system dependency can be obtained by yum install fftw-devel.   ...
written 12 weeks ago by Andrzej Oleś660

Latest awards to Andrzej Oleś

Scholar 9 weeks ago, created an answer that has been accepted. For A: EBImage crashing in for-loop
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: Only 1s created by erode()
Scholar 16 months ago, created an answer that has been accepted. For A: reactive CellCODE heatmap
Scholar 16 months ago, created an answer that has been accepted. For A: Not able to display actual grayscale image using EBImage
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: Only 1s created by erode()
Scholar 16 months ago, created an answer that has been accepted. For A: EBImage read png causes R to crash
Scholar 16 months ago, created an answer that has been accepted. For A: EBImage crashing in for-loop
Scholar 16 months ago, created an answer that has been accepted. For A: EBImage crashing in for-loop
Scholar 21 months ago, created an answer that has been accepted. For A: EBImage crashing in for-loop
Scholar 2.1 years ago, created an answer that has been accepted. For A: EBImage crashing in for-loop

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