User: Martin Aryee

gravatar for Martin Aryee
Martin Aryee20
Reputation:
20
Status:
New User
Location:
Boston, MA, USA
Last seen:
2 years, 3 months ago
Joined:
6 years, 11 months ago
Email:
a***********@mgh.harvard.edu

Posts by Martin Aryee

<prev • 4 results • page 1 of 1 • next >
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Comment: C: bsseq combineList: how to get an HDF5Array-backed object as return value?
... Thanks! That works exactly as expected. I now have the combined HDF5Array-backed BSseq object. I'll report back on my experience working with these objects. ...
written 2.4 years ago by Martin Aryee20
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bsseq combineList: how to get an HDF5Array-backed object as return value?
... I'm using HDF5Array-backed BSseq objects. I'd like to combine several of them into a new HDF5Array-backed object using combineList. I'd like to know 1) how to get a disk-backed BSseq object returned from combineList and 2) how to specify the file to be used. Below is an example of what I'm doing. No ...
bsseq written 2.4 years ago by Martin Aryee20 • updated 2.4 years ago by Peter Hickey460
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Minimal input data format for bsseq
... Hi Kasper, I'd like to use bsseq on a partially preprocessed whole genome bisulfite sequencing dataset. I have a data table with one row per CpG and columns for: 1. chromosome 2. position 3. number of reads supporting an unmethylated CpG (U) 3. number of reads supporting a methylated CpG (M) Is i ...
sequencing alignment bsseq written 6.8 years ago by Martin Aryee20 • updated 6.8 years ago by Kasper Daniel Hansen6.4k
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Answer: A: CHARM - The following columns in sampleKey...
... Hi Andrew, One of the things readCharm does is match up the two channel files (_532 and _635) for each sample. The input to readCharm is file- centric (i.e. two files per sample), and the output is sample-centric. When annotating samples it tries to keep as many columns of the sample description fi ...
written 7.0 years ago by Martin Aryee20

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