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Comment: C: limma and edgeR QL strange results
7.9 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: limma and edgeR QL strange results
7.9 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: limma and edgeR QL strange results
7.9 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: Comparing across sets of regulated genes -- Strategies?
7.9 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: limma and edgeR QL strange results
7.9 years ago Ryan C. Thompson ★ 7.9k
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Answer: C: How to interpret plotBCV plots in edgeR
7.9 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: DESeq2: Applying different pre-filtering for DE and EDA/Visualization of RNASeq
7.9 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: DESeq2: Applying different pre-filtering for DE and EDA/Visualization of RNASeq
7.9 years ago Ryan C. Thompson ★ 7.9k
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How can I evaluate whether ComBat's parametric prior is appropriate for my data?
combat rnaseq sva
7.9 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: EdgeR differentially expressed genes vs normal boxplot visualization
7.9 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: the statistical test that DESeq2 use
8.0 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: How to deal with low-depth RNA-Seq within DESeq2 or edgeR
8.0 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: Design question limma multi variables
8.0 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: Coping with a label/class imbalance in DESeq2
8.3 years ago • updated 8.0 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: Stuck at "Read counting step", "summarizeOverlaps"
8.0 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: Stuck at "Read counting step", "summarizeOverlaps"
8.0 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: What's the relationship between "design" and "contrasts"?
8.0 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: Creating design matrix in LIMMA
8.0 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: Creating design matrix in LIMMA
8.0 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: Creating design matrix in LIMMA
8.0 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: Creating design matrix in LIMMA
8.0 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: Creating design matrix in LIMMA
8.0 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: Creating design matrix in LIMMA
8.0 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: Limma-voom vs limma-trend
8.0 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: What was the very first paper to describe "limma-trend"?
9.4 years ago • updated 8.1 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
8.1 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: edgeR: Unusual BCV plot
8.1 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: Limma-voom vs limma-trend
8.1 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: LogFC in Limma
8.1 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: outlier detection of RNAseq samples
8.1 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: Removing hidden batch effects in my DESeq2 analysis resulted in lower number of
8.2 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: edgeR: Tagwise dispersion when using offset matrix
8.2 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: Removing hidden batch effects in my DESeq2 analysis resulted in lower number of
8.2 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray
8.2 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: Limma for paired and unpaired analysis with adjustment for categorical and conti
8.2 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: Limma for paired and unpaired analysis with adjustment for categorical and conti
8.2 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: RNA-seq analysis edgeR
8.2 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: RNA-seq analysis edgeR
8.2 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: RNA-seq analysis edgeR
8.2 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: RNA-seq analysis edgeR
8.2 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: RNA-seq analysis edgeR
8.2 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: Limma for paired and unpaired analysis with adjustment for categorical and conti
8.2 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: Test whether expression levels of two gene sets are significantly different
8.2 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: Limma for paired and unpaired analysis with adjustment for categorical and conti
8.2 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: edgeR time series DMSO correction
8.2 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: edgeR time series DMSO correction
8.2 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: edgeR RNA-seq analysis using glm
8.2 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: DESeq2 for translation efficiency when there are normalization issues
8.2 years ago Ryan C. Thompson ★ 7.9k
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Comment: C: DESeq2 for translation efficiency when there are normalization issues
8.2 years ago Ryan C. Thompson ★ 7.9k
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Answer: A: 2-Factor Experiment in edgeR, Effect of no reps in one set and two reps in other
8.2 years ago Ryan C. Thompson ★ 7.9k
819 results • Page 5 of 17
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