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Comment: C: Limma analysis with multiple variables
3.9 years ago Ryan C. Thompson ★ 7.9k
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0
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1.3k
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Comment: C: Invalid result error in biomaRt::getBM with archive Ensembl versions
4.0 years ago Ryan C. Thompson ★ 7.9k
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1
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1.3k
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Comment: C: Invalid result error in biomaRt::getBM with archive Ensembl versions
4.0 years ago Ryan C. Thompson ★ 7.9k
0
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1
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993
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Comment: C: Nested Random Effect in LIMMA: Is It Possible?
4.4 years ago Ryan C. Thompson ★ 7.9k
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1.1k
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Comment: C: Making sense out of makeContrasts and using coefficents for contrasts
5.2 years ago Ryan C. Thompson ★ 7.9k
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2
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1.1k
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Comment: C: Making sense out of makeContrasts and using coefficents for contrasts
5.2 years ago Ryan C. Thompson ★ 7.9k
1
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0
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874
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Comment: C: Appropriate design formula for DESeq2 from principles
5.2 years ago Ryan C. Thompson ★ 7.9k
1
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3.1k
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Comment: C: Order of contrasts.fit call (before or after eBayes)
5.2 years ago Ryan C. Thompson ★ 7.9k
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1
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3.1k
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Comment: C: Order of contrasts.fit call (before or after eBayes)
5.2 years ago Ryan C. Thompson ★ 7.9k
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0
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2.7k
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Comment: C: Use of pseudoalignment estimated counts as input to edgeR and Limma-Voom
5.2 years ago Ryan C. Thompson ★ 7.9k
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2.7k
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Comment: C: Use of pseudoalignment estimated counts as input to edgeR and Limma-Voom
5.2 years ago Ryan C. Thompson ★ 7.9k
1
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1.9k
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Comment: C: Taking into account strong batch effect in microarray differential expression an
5.3 years ago Ryan C. Thompson ★ 7.9k
1
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1.9k
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Comment: C: Taking into account strong batch effect in microarray differential expression an
5.3 years ago Ryan C. Thompson ★ 7.9k
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1.3k
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Comment: C: Are spurious correlations possible in correlating two DESeq2 foldchanges compute
5.5 years ago Ryan C. Thompson ★ 7.9k
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3.1k
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Comment: C: Dispersion fit and p-value distributions
5.6 years ago Ryan C. Thompson ★ 7.9k
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3.1k
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Comment: C: Dispersion fit and p-value distributions
5.6 years ago Ryan C. Thompson ★ 7.9k
0
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1
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3.1k
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Comment: C: Dispersion fit and p-value distributions
5.6 years ago Ryan C. Thompson ★ 7.9k
0
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1
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854
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Comment: C: DEseq2 - minimum number of genes
5.6 years ago Ryan C. Thompson ★ 7.9k
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712
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Comment: C: DESeq2 normalization Factor Matrix to correct for uneven targeted sequencing cov
5.6 years ago Ryan C. Thompson ★ 7.9k
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1
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4.7k
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Comment: C: Batch correction when only some subjects have replicates across batches
5.6 years ago Ryan C. Thompson ★ 7.9k
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1
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4.7k
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Comment: C: Batch correction when only some subjects have replicates across batches
5.6 years ago Ryan C. Thompson ★ 7.9k
2
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1
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4.7k
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Comment: C: Batch correction when only some subjects have replicates across batches
5.6 years ago Ryan C. Thompson ★ 7.9k
2
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1
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6.8k
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Comment: C: Voom transformation from counts and normalization to negative values
5.6 years ago Ryan C. Thompson ★ 7.9k
1
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1
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6.8k
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Comment: C: Voom transformation from counts and normalization to negative values
5.6 years ago Ryan C. Thompson ★ 7.9k
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1
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6.8k
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Comment: C: Voom transformation from counts and normalization to negative values
5.6 years ago Ryan C. Thompson ★ 7.9k
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1
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1.1k
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Comment: C: How do I discern if a magnitude difference in expression is up-regulation in one
5.7 years ago Ryan C. Thompson ★ 7.9k
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1.0k
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Comment: C: Limma: Differential expression for micro RNA sequence data
5.7 years ago Ryan C. Thompson ★ 7.9k
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1.7k
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Comment: C: skewed differentially expressed gene results - DESeq2
5.8 years ago Ryan C. Thompson ★ 7.9k
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1.7k
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Comment: C: skewed differentially expressed gene results - DESeq2
5.8 years ago Ryan C. Thompson ★ 7.9k
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1.5k
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Comment: C: unexpected p-value histogram in edgeR
5.9 years ago Ryan C. Thompson ★ 7.9k
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1
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1.5k
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Comment: C: unexpected p-value histogram in edgeR
5.9 years ago Ryan C. Thompson ★ 7.9k
0
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1
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3.1k
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Comment: C: LIMMA on RT-PCR data
updated 5.9 years ago by 50k • written 10.5 years ago by ★ 7.9k
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591
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Comment: C: DESeq Timepoint Design (using Baseline as reference)
5.9 years ago Ryan C. Thompson ★ 7.9k
2
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1.1k
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Comment: C: How to obtain a normalised expression matrix from read counts and scaling factor
6.0 years ago Ryan C. Thompson ★ 7.9k
1
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1
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1.5k
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Comment: C: Calling svaseq() multiple times
6.0 years ago Ryan C. Thompson ★ 7.9k
1
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1
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3.6k
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Comment: C: Batch Correction with only one sample in a batch
6.0 years ago Ryan C. Thompson ★ 7.9k
2
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0
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3.6k
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Comment: C: Batch Correction with only one sample in a batch
6.0 years ago Ryan C. Thompson ★ 7.9k
0
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0
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6.5k
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Comment: C: Filtering step for differential analysis in edgeR
6.0 years ago Ryan C. Thompson ★ 7.9k
0
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1
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6.5k
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Comment: C: Filtering step for differential analysis in edgeR
6.0 years ago Ryan C. Thompson ★ 7.9k
0
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1
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2.9k
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Comment: C: Robust transformation of raw RNA-seq counts for exploratory data analysis and hi
6.0 years ago Ryan C. Thompson ★ 7.9k
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0
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25k
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Comment: C: Import bamfiles for RNAsequencing analysis
6.0 years ago Ryan C. Thompson ★ 7.9k
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1
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25k
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Comment: C: Import bamfiles for RNAsequencing analysis
6.0 years ago Ryan C. Thompson ★ 7.9k
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1
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5.0k
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Comment: C: Filtering for ATAC-seq
6.0 years ago Ryan C. Thompson ★ 7.9k
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5.0k
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Comment: C: Filtering for ATAC-seq
6.0 years ago Ryan C. Thompson ★ 7.9k
0
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1.1k
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Comment: C: How to write a preprocess.reads function for summarizeOverlaps that requires dif
6.1 years ago Ryan C. Thompson ★ 7.9k
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0
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930
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Comment: C: Limma model for paired and pool together
6.1 years ago Ryan C. Thompson ★ 7.9k
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0
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861
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Comment: C: read counts for gene families
6.1 years ago Ryan C. Thompson ★ 7.9k
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1
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1.3k
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Comment: C: Trying to simplify Interaction analysis with edger, and propably failing to do s
6.1 years ago Ryan C. Thompson ★ 7.9k
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1
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2.8k
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Comment: C: Invitation to submit articles to the Bioconductor gateway on F1000Research
6.1 years ago Ryan C. Thompson ★ 7.9k
0
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0
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1.9k
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Comment: C: limma - Multi-level Experiments - time course data
6.1 years ago Ryan C. Thompson ★ 7.9k
435 results • Page 1 of 9
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