Moderator: Laurent Gatto

gravatar for Laurent Gatto
Laurent Gatto680
Reputation:
680
Status:
Trusted
Location:
United Kingdom
Website:
http://lgatto.github.io/
Twitter:
lgatt0
Scholar ID:
Google Scholar Page
Last seen:
2 days, 8 hours ago
Joined:
9 years, 6 months ago
Email:
l****@cam.ac.uk

Laurent Gatto is a senior research associate in the Department of Biochemistry, University of Cambridge and a visiting scientist in the PRIDE team at the EBI. He graduated in Biology from the Free University of Brussels, Belgium, and subsequently earned his PhD in Evolutionary Biology. He pursued his education at the University of Namur studying Computer Science before working in industry on genetic and transcriptomic data analysis. In January 2010, he joined the Cambridge Centre for Proteomics to work on quantitative and organelle proteomics and. In August 2013, he established the Computational Proteomics Unit in the Cambridge System Biology Centre.

Posts by Laurent Gatto

<prev • 155 results • page 1 of 16 • next >
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Comment: C: different compilers and mzR build fails
... Hi Lejeczek, I opened an issue in the mzR github issue tracker. I hope that one of the other developers will be able to help. (By the way, I missed this question because it missed the mzR tag - I would suggest to always add the package name as this should automatically send an email to developers.) ...
written 28 days ago by Laurent Gatto680
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Comment: C: cannot : source("https://bioconductor.org/biocLite.R")
... Have you tried to run install.packages("BiocInstaller", repos="https://bioconductor.org/packages/3.3/bioc") as suggested in the message? ...
written 4 weeks ago by Laurent Gatto680
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Comment: C: Question about Error of "biocLite.R"
... It would be helpful to provide the actual error. ...
written 4 weeks ago by Laurent Gatto680
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Comment: C: mzR failed to open '.raw' file
... >Thank you for your quick reply, Laurent. Do I understand correct that >it is not possible to do the whole analysis in R then? Not sure what your whole analysis is, but once you have converted your files, there's a lot you can do in R. But possibly not everything. Have a look at the RforPr ...
written 3 months ago by Laurent Gatto680
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Comment: C: mzR failed to open '.raw' file
... >Thank you for your quick reply, Laurent. Do I understand correct that >it is not possible to do the whole analysis in R then? Not sure what your whole analysis is, but once you have converted your files, there's a lot you can do in R. But possibly not everything. Have a look at the RforPr ...
written 3 months ago by Laurent Gatto680
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Answer: A: mzR failed to open '.raw' file
... Indeed, mzR doesn't support vendor binary files. It supports all major open formats such as mzML, mzXML, ... You can convert your raw file into any of these using the msconvert software from proteowizard [1]. Best wishes, Laurent [1] http://proteowizard.sourceforge.net/   ...
written 3 months ago by Laurent Gatto680
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Comment: C: Inconsistencies in biomart results
... Thanks, Mike. Nice test with the extra id! ...
written 4 months ago by Laurent Gatto680
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Comment: C: Inconsistencies in biomart results
... Thank, Thomas. Splitting is exactly what I did, but I used batches of 1000; will update to 500. Re "P26043;P26040;P26041", it is a protein group composed of these three proteins, and not getting any result is actually a feature in this case. Too bad however for the isoforms, I might consider doing ...
written 4 months ago by Laurent Gatto680
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Answer: A: Error: 1: Extra content at the end of the document in using biomaRt
... I assume this is related to the maintenance downtime. I also get > biomaRt::listMarts(verbose = TRUE) Attempting web service request: http://www.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt Extra content at the end of the document Error: 1: Extra content at the end of ...
written 4 months ago by Laurent Gatto680
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Inconsistencies in biomart results
... Has anyone any insight into the following annoying inconsistent result?: I get incompatible results for different Biomart queries, each being a subset of the other. My original query consists of retrieve GO terms for 5032 UniProt identifiers. The full query is described below library("biomaRt") a ...
biomart written 5 months ago by Laurent Gatto680 • updated 4 months ago by Thomas Maurel550

Latest awards to Laurent Gatto

Scholar 10 months ago, created an answer that has been accepted. For A: how can i import a Mass spectrometry data in R
Scholar 15 months ago, created an answer that has been accepted. For A: Converting Synapter object output into a MSnbase-compatible object
Scholar 15 months ago, created an answer that has been accepted. For A: how can i import a Mass spectrometry data in R
Centurion 15 months ago, created 100 posts.
Supporter 2.3 years ago, voted at least 25 times.
Autobiographer 2.3 years ago, has more than 80 characters in the information field of the user's profile.

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