Moderator: Laurent Gatto

gravatar for Laurent Gatto
Laurent Gatto1.2k
Reputation:
1,220
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Trusted
Location:
Belgium
Website:
http://lgatto.github.io/
Twitter:
lgatt0
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Google Scholar Page
Last seen:
1 week, 3 days ago
Joined:
12 years, 5 months ago
Email:
l************@gmail.com

I am a Professor of Bioinformatics at the de Duve Institute, at the UCLouvain, Belgium. I am an avid open research advocate and make every possible effort to make my research reproducible and openly available. I am a Software Sustainability Institute fellow and a Data and Software Carpentry instructor. Since 2010, I have been focusing on various aspects of quantitative and spatial proteomics, developing new methods and implementing computational tools with a strong emphasis on rigorous and reproducible data analysis.

Posts by Laurent Gatto

<prev • 268 results • page 1 of 27 • next >
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Answer: A: Error while installing RforMassSpectrometry
... Thank you for reporting the issue. This should be fixed now (at least, according to local tests using R patched and devel). Could you please try again and confirm. Otherwise, please follow up here or, if possible, on the [GitHub issue](https://github.com/rformassspectrometry/RforMassSpectrometry/iss ...
written 10 days ago by Laurent Gatto1.2k
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Comment: C: Total Area Sum Intensity based Normalization for label-free quantitative proteo
... Could you clarify what *Total Area Sum Intensity based Normalization* is. It could very well be already available in `MSnbase` or easy to implement manually. ...
written 4 weeks ago by Laurent Gatto1.2k
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Answer: A: European Bioconductor meeting 2019, 9 - 10 December in Brussels, Belgium
... Registration for the conference at now open - http://eurobioc2019.bioconductor.org/registration ...
written 6 weeks ago by Laurent Gatto1.2k
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Answer: A: European Bioconductor meeting 2019, 9 - 10 December in Brussels, Belgium
... The deadline for abstract submission is tomorrow 30 Oct - submit you abstracts here: http://eurobioc2019.bioconductor.org/registration ...
written 6 weeks ago by Laurent Gatto1.2k
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Comment: C: Writing a loop through multiple fasta files and named files (is it possible with
... You could try to run MSGF+ natively. I have no idea if running it through the `MSGFplus` package has an actual overhead in term of memory, but worth a try. If this fails, you'll probably need a computer with more memory. ...
written 8 weeks ago by Laurent Gatto1.2k
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Comment: C: Writing a loop through multiple fasta files and named files (is it possible with
... Iterating over multiple fasta is technically possible, but I am not sure it is valid. When identifying your peptides, a identification probability is computed that takes into account the risk of calling wrong peptide spectrum matches. That probability depends on the search space, i.e. the size of yo ...
written 8 weeks ago by Laurent Gatto1.2k
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Answer: A: European Bioconductor meeting 2019, 9 - 10 December in Brussels, Belgium
... Flashlight and poster abstract submissions are now open at http://eurobioc2019.bioconductor.org/registration ...
written 11 weeks ago by Laurent Gatto1.2k
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News: European Bioconductor meeting 2019, 9 - 10 December in Brussels, Belgium
... The European Bioconductor meeting is aimed at biologists, bioinformaticians, statisticians, programmers and software engineers who use or contribute to the Bioconductor project, or are interested in using Bioconductor. The goals are to: - foster the exchange of technical expertise - keep contribu ...
news conference eurobioc written 11 weeks ago by Laurent Gatto1.2k
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Job: Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
... A position for a PhD student or post-doctoral research is open in the group of Prof Laurent Gatto at the UCLouvain (Brussels, Belgium) in collaboration with Prof Vince Carey at Harvard University (Boston, MA, USA) to develop the necessary infrastructure and statistical software to integrate genomic, ...
proteomics job software genomics transcriptomics written 11 weeks ago by Laurent Gatto1.2k
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Comment: C: runInfo returns startTimeStamp -infinity
... The only advise I can give you is to download the RAW files and check in there and/or reconvert them to mzML. Other then that, you can try to contact the authors. ...
written 3 months ago by Laurent Gatto1.2k

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Scholar 4 months ago, created an answer that has been accepted. For A: how can i import a Mass spectrometry data in R
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