User: Enrica

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Enrica20
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Posts by Enrica

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Comment: C: runSPIA() in graphite package
... Thanks John for your appreciation and feedback! Unfortunately is not possible analyse pathways on the fly. The conversion procedure that transforms pathways into networks is intensive, therefore we perform the conversion outside the R environment and than we insert the networks within our R package ...
written 6.3 years ago by Enrica20
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Answer: A: runSPIA() in graphite package
... Dear John, the procedure you applied to analyse your data is right. However, the runSpia function filters out those pathways that have no edges or less than 5 nodes with valid edges. Your pathway, after the conversion to Entrez Gene, do not satisfy neither the conditions, having no edges. > pe& ...
written 6.3 years ago by Enrica20

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