User: Robert Ivanek

gravatar for Robert Ivanek
Robert Ivanek590
Reputation:
590
Status:
Trusted
Location:
Switzerland
Last seen:
6 days, 7 hours ago
Joined:
6 years, 2 months ago
Email:
r************@unibas.ch

Posts by Robert Ivanek

<prev • 89 results • page 1 of 9 • next >
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Comment: C: Gviz (GenomicInteractions) arc height and boundaries
... Hi Nik, If you provide me with a reproducible example I can have a look what could be implemented in `Gviz` to improve your visualisation. Best, Robert ...
written 8 days ago by Robert Ivanek590
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Comment: C: Can GViz show multiple HighlightTrack with multiple colors in the same track?
... Thanks. I fixed it in the documentation it will be available with next minor version bump. ...
written 14 days ago by Robert Ivanek590
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Comment: C: Gviz unable to retrieve cytoband data for sacCer3 when trying to create ideogram
... There is no cytoband data for sacCer3 at UCSC. ...
written 5 weeks ago by Robert Ivanek590
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Answer: A: Gviz unable to retrieve cytoband data for sacCer3 when trying to create ideogram
... Hi, This was just a warning not error, telling you that there is no cytoband data available for yeast genome ''sacCer3". However in that case, `Gviz` draws a simple chromosome highlighting the position of your interest: ``` library(Gviz) plotTracks(ideogram, from=1e5, to=1.5e5) ``` Best Robert ...
written 5 weeks ago by Robert Ivanek590
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Comment: C: Gviz: decreasing tick resolution
... Hi Will, It works for me. Can you post your code? Best, Robert ...
written 11 weeks ago by Robert Ivanek590
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Job: Postdoctoral Fellow in Genomics (University of Basel, Switzerland)
... __Postdoctoral Position: Bioinformatics (100%)__ The [Molecular Immune Regulation group](https://biomedizin.unibas.ch/en/research/research-groups/jeker-lab/) at the Department of Biomedicine of the University Hospital Basel in Switzerland is seeking a highly motivated postdoc with a strong backgrou ...
job postdoc switzerland basel written 12 weeks ago by Robert Ivanek590
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Comment: C: Adding a legend to a GeneRegionTrack?
... Hi, Currently it is implemented only for `DataTrack-Class`. Do you have an example code where do you want to use it? Best, Robert ...
written 3 months ago by Robert Ivanek590
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Answer: A: Truncated Gviz plot
... Hi Mario, Thanks for reporting it. I changed settings for "sashimi" plots in Gviz. There should be new version compiled in release (1.26.5) and in development (1.27.6). They should be available in next few days. Let me know if that fixed your problem. Best Robert ...
written 3 months ago by Robert Ivanek590
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Comment: C: Error loading Gviz package object path is not exported by namespace:Rsamtools
... Hi, what is the version of `Gviz` package you are using? Best Robert ...
written 5 months ago by Robert Ivanek590
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Comment: C: Gviz: decreasing tick resolution
... You need to specify the positions of tick marks, i.e. seq(280e3, 320e3, 40e3). Complete example: library(Gviz) axisTrack <- GenomeAxisTrack() plotTracks(axisTrack, from=270e3, to=330e3) with ticksAt parameter: plotTracks(axisTrack, from=270e3, to=330e3, ticksAt=seq(280e3, 320e3, 40e3)) ...
written 5 months ago by Robert Ivanek590

Latest awards to Robert Ivanek

Scholar 5 months ago, created an answer that has been accepted. For A: Gviz GeneRegionTrack draw only one gene in the range
Scholar 5 months ago, created an answer that has been accepted. For A: gviz: error when plotting BiomartGeneRegionTrack with just.group="above"
Scholar 2.1 years ago, created an answer that has been accepted. For A: Gviz: AlignmentsTrack from a bam file with non-UCSC chromosome names
Scholar 2.1 years ago, created an answer that has been accepted. For A: Gviz GeneRegionTrack draw only one gene in the range
Scholar 2.1 years ago, created an answer that has been accepted. For A: Different junction numbers from sashimi plot of Gviz package and summarizeJuncti
Scholar 2.1 years ago, created an answer that has been accepted. For A: gviz: error when plotting BiomartGeneRegionTrack with just.group="above"
Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: Gvis: Adding colour and transparency to overlaid alignment tracks
Scholar 3.1 years ago, created an answer that has been accepted. For A: gviz: error when plotting BiomartGeneRegionTrack with just.group="above"
Scholar 3.1 years ago, created an answer that has been accepted. For A: Gviz GeneRegionTrack draw only one gene in the range
Scholar 3.2 years ago, created an answer that has been accepted. For A: gviz: error when plotting BiomartGeneRegionTrack with just.group="above"
Scholar 3.3 years ago, created an answer that has been accepted. For A: gviz: error when plotting BiomartGeneRegionTrack with just.group="above"
Scholar 3.4 years ago, created an answer that has been accepted. For A: gviz: error when plotting BiomartGeneRegionTrack with just.group="above"
Scholar 3.5 years ago, created an answer that has been accepted. For A: gviz: error when plotting BiomartGeneRegionTrack with just.group="above"
Scholar 3.7 years ago, created an answer that has been accepted. For A: gviz: error when plotting BiomartGeneRegionTrack with just.group="above"
Scholar 4.2 years ago, created an answer that has been accepted. For A: gviz: error when plotting BiomartGeneRegionTrack with just.group="above"

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