User: Anne Deslattes Mays

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30
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New User
Location:
United States
Last seen:
4 years, 10 months ago
Joined:
6 years, 2 months ago
Email:
a****@georgetown.edu

Posts by Anne Deslattes Mays

<prev • 4 results • page 1 of 1 • next >
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ggbio() + geom_alignment has stopped working
... Hello, This command for displaying the canonical sequence has been working fine for a while, suddenly a week ago, it stopped, maybe two, I have seen one or two other posts but no replies -- so I am adding my voice.   Here is an example of failure.  It works for ACTB, LMO7, but not for B2M,LMO2, MPO ...
ggbio bugs written 4.9 years ago by Anne Deslattes Mays30
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Answer: A: Bioconductor Digest, Vol 138, Issue 27
... Hi Laurent, As you consider use cases ? consider a user wanting to add their own data. You may have then, canonical transcript isoforms, sample specific transcript isoforms. So you have canonical proteins, with their annotations. If the sample specific alters that, say causes a loss of a domain, ...
written 5.0 years ago by Anne Deslattes Mays30
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Positional Details with Features through UniProt.ws Ultimately to display as tracks in ggbio
... Dear all, biocLite(?UniProt.ws?) library(UniProt.ws) select(UniProt.ws,keys=("P02794"),columns=c("DOMAINS","FEATURES"),key type="UNIPROTKB") Getting extra data for P02794 NA NA etc UNIPROTKB DOMAINS 1 P02794 Ferritin-like diiron domain (1) FEATURES 1 Chain ...
annotate ggbio written 5.0 years ago by Anne Deslattes Mays30 • updated 5.0 years ago by Tengfei Yin490
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Error loading GO.db
... Dear annotation team, Thanks for the awesome work you do -- I try to load biocLite("ReportingTools") and get an error regarding GO.db GO.db says it depends upon AnnotationDbi I load biocLite("AnnotationDbi") I try to load biocLite("GO.db") and get an error > biocLite("GO.db") BioC_mirror: http ...
annotation go written 6.2 years ago by Anne Deslattes Mays30 • updated 6.2 years ago by Dan Tenenbaum8.2k

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Popular Question 4.9 years ago, created a question with more than 1,000 views. For Error loading GO.db

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