User: Lawson, Nathan

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5 years, 12 months ago
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5 years, 12 months ago
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n************@umassmed.edu

Posts by Lawson, Nathan

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Comment: C: error loading dba in DiffBind
... Gord, Excellent! That did the trick. Thanks for your help. Thanks, Nathan On Jun 19, 2013, at 12:23 PM, Gordon Brown wrote: > Hi, > > Turns out your sample sheet doesn't specify the peak format or peak > caller. If you try again with: > >> x = dba(sampleSheet='AVbothCh ...
written 6.0 years ago by Lawson, Nathan30
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Answer: A: error loading dba in DiffBind
... Gord, Thanks for the quick reply. Attached is a .zip file with all of the peaksets (they are not so big since they are only from one chromosome) and the sample sheet file. Below is session info from our cluster as well as from my computer (this is a run from the terminal, but I have also run it ...
written 6.0 years ago by Lawson, Nathan30
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Answer: A: error loading dba in DiffBind
... I am using DiffBind to identify differentially occupied elements from histone modification ChIP-Seq between two different cell lines. I successfully ran the package on my own computer with peaks and mapped reads limited to a single human chromosome as a test. The analysis ran nicely and the resul ...
written 6.0 years ago by Lawson, Nathan30

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