User: Nitesh Turaga

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Posts by Nitesh Turaga

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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
... To avoid this error: Parsing file: 100929+AF8-HG19+AF8-Deluxe+AF8-Prom+AF8-Meth+AF8-HX1.ndf... OK Parsing file: 100929+AF8-HG19+AF8-Deluxe+AF8-Prom+AF8-Meth+AF8-HX1.pos... OK Merging NDF and POS files... OK Parsing file: 15433N+AF8-532.xys... OK Creating package in ./pd.100929.hg19.deluxe.prom.met ...
annotation probe written 5.0 years ago by Nitesh Turaga50
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Answer: A: Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) :
... Hi, Quick question, to which column in the ndf file does "bgfeature" correspond to? And how should the values look like? After replacing the empty string with experimental, I'm getting this error now. > makePdInfoPackage(pkg,destDir = ".") ====================================================== ...
written 5.1 years ago by Nitesh Turaga50
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Answer: A: Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) :
... Hi Dr.Carvalho, Please let me know your thought process about what exactly you think is wrong with the "ndf" file. Is it something I'm doing wrong or the ndf file needs to be re arranged to meet some package requirements? Best, Nitesh On 8/26/13 3:24 PM, "Nitesh Turaga" wrote: > >Hi Dr.C ...
written 5.1 years ago by Nitesh Turaga50
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
... Hi Dr.Carvalho, > ndf = read.table("100929_HG19_Deluxe_Prom_Meth_HX1.ndf", >stringsAsFactors=FALSE, sep='\t', header = TRUE) > head(ndf) PROBE_DESIGN_ID CONTAINER DESIGN_NOTE SELECTION_CRITERIA 1 537151_1_25 BLOCK1 interval rank target_tm:76.00;probe_tm:7 ...
annotation process pdinfobuilder charm written 5.1 years ago by Nitesh Turaga50
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
... Hi, I'm a little stuck with the charm analysis using MeDip arrays. It started with an error at "readCharm" and trickled into the finer details of what information the function needed. I have seen the previous question in https://stat.ethz.ch/pipermail/bioconductor/2012-February/043719.html . Here, ...
annotation process pdinfobuilder charm written 5.1 years ago by Nitesh Turaga50 • updated 5.1 years ago by Benilton Carvalho4.2k

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