User: Aki Hoji

gravatar for Aki Hoji
Aki Hoji10
Reputation:
10
Status:
New User
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Last seen:
2 weeks, 6 days ago
Joined:
6 years ago
Email:
a****@pitt.edu

Posts by Aki Hoji

<prev • 5 results • page 1 of 1 • next >
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Answer: A: Error: With R version 3.5 or greater, install Bioconductor packages using BiocMa
... I found a culprit. I have three R project directories and home directory and each of those have .Rprofile. I thought I commented out/deleted "source("https://bioconductor.org/biocLite.R") from all the .Rprofile but I missed removing it from one of them. Now the problem solved. Thanks @shahryary ...
written 20 days ago by Aki Hoji10
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Error: With R version 3.5 or greater, install Bioconductor packages using BiocManager
... Hi, Every update/installation of packages by BiocManager fails with a following typical error message; * Trying 99.84.168.92... * TCP_NODELAY set * Connected to bioconductor.org (99.84.168.92) port 443 (#0) * ALPN, offering http/1.1 * Cipher selection: ALL:!EXPORT:!EXPORT40 ...
software error written 21 days ago by Aki Hoji10
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Package update issue under OSX Sierra
... OSX Sierra (BuildVersion:  17B48) broke something but I can't tell. When I try to update multiple packages, compilation fails as below.  I'd really appreciate any pointers and tricks to solve this issue. Thanks               Installing package into ‘/Volumes/Documents/Users/akihoji/Library/R/3.x/ ...
compilation error osx written 22 months ago by Aki Hoji10 • updated 22 months ago by nitesh.turaga140
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exporting bi-exponetially transformed data as CVS
... Hi, Is is possible to extract bi-exp transformation values embedded in a Flowjo worksheet,  apply to compesanted fcs data and export the data as a CSV file by using flowWorkspace and/or flow core ? Any help will be appreciated. Thanks in advance.         ...
flowcore flowworkspace written 2.6 years ago by Aki Hoji10 • updated 2.6 years ago by Jiang, Mike1.2k
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eayRNASeq with Ensemble GRCh37 help
... Hi, I've been trying to generate an output file for DESeq2 by easyRNASeq. An input file is a BAM generated by Tophat2/Bowtie2 with Ensemble GRCh37.72 which was a part of Illumina's iGenome package. I followed the overview and samples of easyRNASeq in a BioC mailing list and fired up a following; ...
annotation organism easyrnaseq deseq2 written 6.0 years ago by Aki Hoji10 • updated 6.0 years ago by delhomme@embl.de1.2k

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