User: Kabhir

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Kabhir10
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1 year, 3 months ago
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4 years, 1 month ago
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Posts by Kabhir

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Error in ReactomePA
... Is it possible to know how in ReactomePA  it has the filter only for six or seven entries. It isn't possible to avail p-values for more entries ?? ...
written 16 months ago by Kabhir10
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Comment: C: Error in ReactomePA
... I am using ReactomePA version 1.16.2 as mentioned in bioconductor summary: > sessionInfo() R version 3.3.0 (2016-05-03) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.10.5 (Yosemite)   locale: [1] C   attached base packages: [1] stats     graphics  grDevices utils ...
written 16 months ago by Kabhir10
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Comment: C: Error in ReactomePA
... Below attached is the link to part of the file: https://www.dropbox.com/s/wvp1lmvpprvkutm/file.txt?dl=0 After that I used the code : library(ReactomePA) df =read.table(“file.txt") f=df[,(“entrezgene")] v <- na.omit(f) g=unique(v) l=as.character(g) x <- enrichPathway(gene=l,organism="m ...
written 16 months ago by Kabhir10
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Comment: C: Error in ReactomePA
... Dear Guangchuang Yu, Thanks a lot for replying. But I am still not getting the effective results. It will be really helpful. If can put more light on it. I am using ReactomePA package. Here is my code which I am using:  library(ReactomePA) df =read.table("GO_Chip-seq.txt") > head(df)      ...
written 16 months ago by Kabhir10
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Comment: C: Error in ReactomePA
... Here is the part of code with head of (l): x <- enrichPathway(gene=l,organism="mouse",pvalueCutoff=0.05, readable=T) head(l) [1] "30054"  "237898" "217026" "12833"  "27364"  "22158"  > head(x) Error in x[seq_len(n)] : object of type 'S4' is not subsettable  head(summary(x)) [1] ID      ...
written 16 months ago by Kabhir10
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Error in ReactomePA
... Hi all, I am using R package ReactomePA for enrichment analysis. But I am getting this type of error after reading each command perfectly also. Error in x[seq_len(n)] : object of type 'S4' is not subsettable Thanks! Any help ? ...
R reactomepa written 16 months ago by Kabhir10 • updated 16 months ago by Guangchuang Yu800
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error loading dba in DiffBind
... Hello, Actually I am also getting same error after printing values: Error in if (res >= minval) { : missing value where TRUE/FALSE needed Can you Please tell me what is going wrong? Thanks a lot ankit ...
written 4.1 years ago by Kabhir10

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