User: Hector Corrada Bravo

Reputation:
60
Status:
Trusted
Location:
United States
Website:
http://cbcb.umd.edu/~h...
Twitter:
@hcorrada
Last seen:
1 year, 5 months ago
Joined:
4 years, 11 months ago
Email:
h*******@gmail.com

Posts by Hector Corrada Bravo

<prev • 12 results • page 1 of 2 • next >
0
votes
2
answers
151
views
2
answers
Answer: A: cpgCollapse in Minfi
... When argument ‘returnBlockInfo=TRUE’ that information is returned as well. In your example, it is included in `collapsingGset[[2]]` On Mar 5, 2018, 12:21 PM -0500, cbartle3 [bioc] <noreply@bioconductor.org>, wrote: > Activity on a post you are following on support.bioconductor.org > Use ...
written 7 months ago by Hector Corrada Bravo60
0
votes
1
answers
155
views
1
answers
Answer: A: metagenomeSeq pre-analysis Data Preporation for full genome sequencing
... metagenomeSeq assumes you have a count matrix for features of interest (genes or taxa). Look at tools like kraken or metaphlan2 to create a count matrix. Hector On Jan 15, 2018, 8:56 PM -0500, cmapoulton [bioc] <noreply@bioconductor.org>, wrote: > Activity on a post you are following on su ...
written 9 months ago by Hector Corrada Bravo60
0
votes
0
answers
211
views
0
answers
What's new in epiviz
... The most recent Bioconductor version includes updates to epivizr and a new package, metavizr, for interactive visualization of metagenomic data. We wrote a post describing these, and took the opportunity to update on other developments in the Epiviz project.   https://epiviz.github.io/post/2017-05 ...
epivizr metavizr written 17 months ago by Hector Corrada Bravo60
0
votes
1
answers
408
views
1
answers
Answer: A: Survey on interactive visualization and Bioconductor
... We want to share results from this survey during developer day at the upcoming BioC 2016. We've had great participation but want to encourage those who haven't taken the survey yet to consider doing so in the next couple of days. https://umdsurvey.umd.edu/SE/?SID=SV_5bXhBBZ8cKY08yp Thanks! Hector ...
written 2.3 years ago by Hector Corrada Bravo60
0
votes
1
answer
408
views
1
answer
Survey on interactive visualization and Bioconductor
... Dear BioC community, As part of an NIH grant for developing interactive visualization tools for genomic data we want to reach out to the Bioconductor community for your thoughts on how these tools could be used within your data analysis activities. Please participate in this short survey and help u ...
visualization epivizr written 2.4 years ago by Hector Corrada Bravo60
0
votes
1
answers
329
views
1
answers
Answer: A: Epivisr namespace error
... Hello, This is fixed in version v1.0.2 available on SVN now, will propagate to builds within the next 24 hours. Please let me know how it goes.  ...
written 2.4 years ago by Hector Corrada Bravo60
0
votes
2
answers
736
views
2
answers
Answer: A: Minfi error with new R and bioconductor update
... Please add `sessionInfo` to your post. ...
written 2.9 years ago by Hector Corrada Bravo60
1
vote
0
answers
626
views
0
answers
enrichment analysis for gene pairs
... Has anyone run into this setting before and know if a package in BioC supports this? Given pairs of genes, perform enrichment analysis for pairs of categories (e.g., a pair GO BP terms, one for each gene in the pair, that appear together in the list of gene pairs more frequently than expected).   ...
go gostats category gsea written 3.0 years ago by Hector Corrada Bravo60
0
votes
1
answers
685
views
1
answers
Answer: A: model.matrix in metagenomeSeq
... Missing '~' in the formula specification? mod = model.matrix(~Treatment+Before+normFactor) ...
written 3.4 years ago by Hector Corrada Bravo60
2
votes
0
answers
489
views
0
answers
Interactive Visualization with Epivizr (what's new in this release)
... Dear BioC Users, Version 1.4 of epivizr was released as part of the new Bioconductor 3.0 release. There are a good number of new features in epivizr in this release, including the ability of running the visualization UI within R, making R/Bioconductor capable of running it's own genome browser. Yo ...
visualization epivizr written 4.0 years ago by Hector Corrada Bravo60

Latest awards to Hector Corrada Bravo

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 398 users visited in the last hour