User: Peter Crisp

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Peter Crisp10
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10
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New User
Location:
Australia
Last seen:
4 years, 6 months ago
Joined:
5 years, 4 months ago
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p*********@gmail.com

Posts by Peter Crisp

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Comment: C: limma voom accessing normalised counts tables
... Great, thanks for the clarification! ...
written 4.6 years ago by Peter Crisp10
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Comment: C: limma voom accessing normalised counts tables
... Hi Aaron and Steve, Thanks for the replies. Yeah I have used the original counts (incidentally the results are very similar using either original or voom transformed counts... as you might expect). Re the voom normalised expression values: I have noticed a curiosity.  When I sum the columns by c ...
written 4.6 years ago by Peter Crisp10
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limma voom accessing normalised counts tables
... Hi all, I'm using voom and limma to analyse RNAseq data.  I'm comparing the percentage distribution of reads among different categories of transcripts within a sample with the aim of making a stacked percentage bar plot (or similar), for instance: counts for protein-coding (97%) vs pre-miRNA (1%) v ...
geneexpression rnaseq limma voom counts written 4.6 years ago by Peter Crisp10 • updated 4.6 years ago by Steve Lianoglou12k
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Error using oligo package with Affymetrix Arabidopsis Gene ST1.0 array data: paCalls() returns error 'vector would be too long'
... Hi All, Not sure if this is a BioC issue or a more general R issue but thought I'd start here. I am analyzing some Affymetrix Arabidopsis Gene 1.0 ST arrays using oligo and when I run paCalls() I get the error: Computing DABG calls... Error in 0:max(counts) : result would be too long a vector In ...
oligo oligoclasses written 5.4 years ago by Peter Crisp10

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Popular Question 4.6 years ago, created a question with more than 1,000 views. For limma voom accessing normalised counts tables

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