User: Jesper Robert Gadin

Reputation:
20
Status:
New User
Location:
European Union
Last seen:
4 years, 2 months ago
Joined:
5 years, 7 months ago
Email:
j********@gmail.com

Posts by Jesper Robert Gadin

<prev • 4 results • page 1 of 1 • next >
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Answer: A: Error using 'scanForHeterozygotes' function in AllelicImbalance package
... Hello, There are two errors here, 1)  Error in new[start[i]:(start[i] + length(toKeep[[i]]) - 1), i] <- charList[[i]][toKeep[[i]]] : number of items to replace is not a multiple of replacement length Has been solved, see here (https://github.com/pappewaio/AllelicImbalance/issues/3) 2)  ...
written 4.2 years ago by Jesper Robert Gadin20
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Answer: A: Error message from 'scanForHeterozygotes' function in AllelicImbalance package
... Hello, Sorry to be late with my reply! This error was solved some months ago, see https://github.com/pappewaio/AllelicImbalance/issues/3 Jesper ...
written 4.2 years ago by Jesper Robert Gadin20
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Comment: C: AllelicImbalance with VCFs?
... Hey again, I experimented a little using scanVcf as import-function for ".bcf files", but unfortunately it did not work as well as I hoped. Actually not sure if scanVcf is meant to be used on .bcf files... #took out ex2.vcf that is the example file in the VariantAnnotation-package. Processed it as ...
written 5.6 years ago by Jesper Robert Gadin20
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Answer: A: AllelicImbalance with VCFs?
... Hi Tim, Glad to hear you find the package useful also for validation! 1) There is no implementation of scanVcf, because I didn't want the package to depend on too many other packages. Didn't have problems with the scanBcf myself, and therefore saw no reason to include scanVcf. That was the reason, ...
written 5.6 years ago by Jesper Robert Gadin20

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