User: rafi A

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rafi A20
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4 years, 7 months ago
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Posts by rafi A

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Comment: C: Probe to gene id conversion
... Thanks, very helpful -R ...
written 4.6 years ago by rafi A20
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Probe to gene id conversion
... Hi all, I use the “annotate” package to convert affymetrix 3’ probe to gene ids. For some probes it does not find corresponding gene ids. For example, searching for “1368587_at” and “1385248_a_at” gives ‘NA’. library("annotate") library("rat2302.db") getEG(c("1368587_at","1385248_a_at"),"rat2302" ...
annotate biomart probe to gene id written 4.6 years ago by rafi A20 • updated 4.6 years ago by James W. MacDonald50k
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Comment: C: Cluster stability/robustness
... Hi James, Thanks for your reply. My understanding is clusterStab takes an input of expression matrix of genes and conditions and then output number of clusters and stability of clusters using hclust. In my case, I have already used hclust with dynamictreecut to generate clusters. So I am curious t ...
written 5.3 years ago by rafi A20

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Popular Question 4.6 years ago, created a question with more than 1,000 views. For Probe to gene id conversion

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