User: rafi A
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- 4 years, 9 months ago
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Posts by rafi A
Comment: C: Probe to gene id conversion
... Thanks, very helpful -R ...
... Hi all, I use the “annotate” package to convert affymetrix 3’ probe to gene ids. For some probes it does not find corresponding gene ids. For example, searching for “1368587_at” and “1385248_a_at” gives ‘NA’. library("annotate") library("rat2302.db") getEG(c("1368587_at","1385248_a_at"),"rat2302" ...
Comment: C: Cluster stability/robustness
... Hi James, Thanks for your reply. My understanding is clusterStab takes an input of expression matrix of genes and conditions and then output number of clusters and stability of clusters using hclust. In my case, I have already used hclust with dynamictreecut to generate clusters. So I am curious t ...
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