User: Elena Serrano

gravatar for Elena Serrano
Reputation:
30
Status:
New User
Location:
Spain
Last seen:
1 year, 9 months ago
Joined:
3 years, 10 months ago
Email:
e*************@gmail.com

Posts by Elena Serrano

<prev • 8 results • page 1 of 1 • next >
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Comment: C: read.qPCR error : File incorrect, make sure that detectors are the same for all
... Hi, no, there are exactly the same number of samples for each detector; there are 16 samples, and all of them have the same "kit" of detectors. It was my mistake in selecting one of the data to show in the post that make it seem as being represented in different number. The original plates are 384 ...
written 21 months ago by Elena Serrano30
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read.qPCR error : File incorrect, make sure that detectors are the same for all samples
... Hi,   i'm trying to read a tab delimited file with read.qPCR in package ReadqPCR to use the data with NormqPCR to apply geNorm method to obtain the best housekeeping genes in my experiment. The data were obtained with Absolute Quantification (PCR kit supplier requisite) in a 7900HT qPCR. I've tr ...
error read.qpcr detectors written 22 months ago by Elena Serrano30
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Graphic representation of mroast results
... Hi, I've analyzed for an investigator of my institution some expression data for DGE with limma. Afterwards, I've used limma mroast function to perform GO enrichment analysis in the same expressionSet and design. I've found some interesting GO terms, but the investigator whose arrays I'm analyzing ...
visualization mroast written 2.5 years ago by Elena Serrano30
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Answer: A: pd.huex.1.0.st.v2 package doubt
... Dear James and Benilton, thank you a lot for your answers, and thank you, Benilton, for the link to the package. I've made one of  my own (it was the first time I tried it), and, although I've got a package, and was able to install it and work with it , some of the information present in the pd.hu ...
written 2.5 years ago by Elena Serrano30
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pd.huex.1.0.st.v2 package doubt
... Hi,   I'm analyzing some Human Exon Arrays from Affymetrix, from a pilot study, with oligo package, at transcript (core) level. For the samples analyzed, I have some phenoData, as the expression levels (low / high, obtained by qRT-PCR) and mutational status of some genes. As it's a pilot study wi ...
oligo exon array analysis written 2.5 years ago by Elena Serrano30 • updated 2.5 years ago by Marc Carlson7.2k
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Draft support for HTA 2.0 with oligo
... Hi! Thank you a lot Benilton! The package works very nicely! I have analyzed my first HTA2.0 arrays without any problem! Best regards, Elena 2014-02-08 22:47 GMT+01:00 Benilton Carvalho : > Hello, > > given the several requests I got re: supporting HTA 2.0 chips when using > oligo, ...
annotation oligo pdinfobuilder written 3.6 years ago by Elena Serrano30
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Affymetrix HTA 2 array analysis
... Dear Benilton, thanks for your e-mail. I'm sorry for not having writed back till now, but I have just read it (I don't know why it was not labelled, so I lost it among all the others from bioconductor....) I will try to analyze the arrays I have pending with your script. I will write back soon! T ...
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Affymetrix HTA 2 array analysis
... Hi all, Benilton, could you please update us if there is being some progress in getting the annotation files for HTA 2.0 affymetrix arrays? I am following this topic but I think there's not been any more comment after yours on 11/18/13 and I wonder whether I've missed something about the topic. T ...

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Popular Question 22 months ago, created a question with more than 1,000 views. For Affymetrix HTA 2 array analysis

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