User: André Faure

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André Faure30
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Posts by André Faure

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Comment: C: Rcade analysis without ChIP-seq replicates
... Ok thanks Jonathan - I will remove these genes then. André On 13 Feb 2014, at 20:03, Jonathan Cairns wrote: > Hi André, > > Apologies for the delay responding. > > I'm not sure why genes with M.ChIP < 0 are not being filtered out; I'll take a look when I get a chance and then ...
written 3.8 years ago by André Faure30
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Comment: C: Rcade analysis without ChIP-seq replicates
... Hi Jonathan, Many thanks for getting back to me. I have updated to the latest versions of R and Rcade 1.4.0 and the results are looking more sensible (schoolboy error sorry). Maximum p.ChIP = 0.7 and most genes have positive ChIP log-ratios (M.ChIP). I have used the exportRcade() function to obt ...
written 3.8 years ago by André Faure30
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Rcade analysis without ChIP-seq replicates
... Dear all, I'm using the bioconductor package "Rcade" to determine likely direct targets of a transcription factor. I have corresponding ChIP-seq data (one ChIP and one Input sample, no replicates unfortunately) and microarray gene expression data before/after forced expression of the TF. I'm consi ...
transcription rcade written 3.8 years ago by André Faure30 • updated 3.8 years ago by Jonathan Cairns60

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