User: Giovanni Calice

gravatar for Giovanni Calice
Reputation:
150
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Location:
Italy
Last seen:
4 days, 20 hours ago
Joined:
3 years, 11 months ago
Email:
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Posts by Giovanni Calice

<prev • 77 results • page 1 of 8 • next >
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Comment: C: Rgraphviz installation fails
... I'm sorry if I did not describe better in the previous message. Yes, everything works after updating and readjusting the configuration.   Best, Giovanni ...
written 4 days ago by Giovanni Calice150
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Comment: C: DMRcate results cg ID of significant DMR
... Hi Tim, Thanks for response. Best, Giovanni ...
written 6 days ago by Giovanni Calice150
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Comment: C: Rgraphviz installation fails
... Hi Kasper, as I announced I have updated R to the latest version and lightly readjusted my configure command call removing very little for other stuff and anyway linking the rest to have all in capabilities() TRUE/Ok. So Rgraphviz is intalled correctly to the latest version 2.22.0 . Best, Giov ...
written 6 days ago by Giovanni Calice150
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Comment: C: IlluminaHumanMethylationEPIC array nSNPsRead and MethylSet probes
... Dear Kasper, in fact for the 450k it never happened this issue. Thanks for response, Best Giovanni ...
written 6 days ago by Giovanni Calice150
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IlluminaHumanMethylationEPIC array nSNPsRead and MethylSet probes
... Hi all, I'm processing some new IlluminaHumanMethylationEPIC arrays but I obtained different reading number of SNPs (nSNPsRead) in the IDAT files, 1051815, compared to the ones I've always usually got from IlluminaHumanMethylationEPIC array, 1052641 . # # Old chip file # old <- readIDAT("/wor ...
minfi illuminaio illuminahumanmethylationepicmanifest written 7 days ago by Giovanni Calice150 • updated 7 days ago by Kasper Daniel Hansen6.3k
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limma results more probes for same gene
... Hi all, I've processed some differential analysis by limma on Illumina Gene Expression Array, and I'm working to intersect the results. I am of the opinion that the correct choice to intersect is by Probe Id (unique field) and I usually did so. Now I was wondering again if you want to intersect by ...
limma written 4 months ago by Giovanni Calice150
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Comment: C: Rgraphviz installation fails
... Hi Kasper, Ok I've already checked my env and mentioned the only env var that refers to R. There's something to reset in configure command when I installed R; what I was wondering is why the compilation is successfull for all other packages . Anyway I'll reset/reinstall R (also because I want to ...
written 4 months ago by Giovanni Calice150
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Comment: C: Rgraphviz installation fails
... Sorry, How can I fix/force the lib path before run Rgraphviz installation? ...
written 4 months ago by Giovanni Calice150
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Comment: C: Rgraphviz installation fails
... Yes, I disinstalled the graphviz version 2.28.0; this was just another test to verify if the Rgraphviz installation was successful. Anyway there isn't any configuration file (like .R/Makevars) and the only env var set, which concerns R, is R_LIBS_USER=/usr/local/lib64/R/library_Bioc that I set f ...
written 4 months ago by Giovanni Calice150
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Comment: C: Rgraphviz installation fails
... checking for ld used by gcc -std=gnu99... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum le ...
written 4 months ago by Giovanni Calice150

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