User: Tiphaine Martin

Reputation:
20
Status:
New User
Location:
France
Last seen:
1 year, 7 months ago
Joined:
3 years, 9 months ago
Email:
t**************@kcl.ac.uk

Posts by Tiphaine Martin

<prev • 23 results • page 1 of 3 • next >
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Comment: C: install new package from bioconductor
... http work, but not https for me. Thank you. ...
written 2.1 years ago by Tiphaine Martin20
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Answer: A: install new package from bioconductor
... Hi Julie,   It works, but why is  in the page of S4Vector, the instruction to install this page ? source("https://bioconductor.org/biocLite.R") biocLite("S4Vectors") I checked for my package and I have what you propose. any way, it works. So I can carry on :) Thanks, Tiphaine ...
written 2.1 years ago by Tiphaine Martin20
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install new package from bioconductor
... Hi, I tried to install new packages and I have this error message source("https://bioconductor.org/biocLite.R") Error in file(filename, "r", encoding = encoding) : https:// URLs are not supported I did some update of package on my version of ubuntu. I didn't think that one of them can influenc ...
software error bioconductor written 2.1 years ago by Tiphaine Martin20 • updated 2.1 years ago by Julie Zhu3.8k
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Answer: A: Question: Change the color of the link between 2 features belonging to the same
... Hi Florian, I can understand it can be tricky to have simple solution to expose that level of granularity in the UI. Consequently, I can bypass the group level in considering that the link between 2 objets is a new object with different type. In this case, I can put the color that I would like but ...
written 2.3 years ago by Tiphaine Martin20
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Answer: A: Change the features and colors in BiomartGeneRegionTrack
... Ok, it works now ! ...
written 2.3 years ago by Tiphaine Martin20
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Question: Change the color of the link between 2 features belonging to the same group depending on the type of the link
... Dear Florian,   I would like to visualise the link to 2 features. Each feature has color related to their type and the link has the color related to its type. For example from eQTL: SNP  has its color  exon has its color depending on its type, but it can be 5UTR exon, or coding exon, 3UTRexon ...
gviz annotationtrack written 2.3 years ago by Tiphaine Martin20 • updated 2.2 years ago by florian.hahne@novartis.com1.5k
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Answer: A: Change the features and colors in BiomartGeneRegionTrack
... Hi Florian,   If you prefer to do this way, it looks better and more straightway but I still have the same issue because in theory,  only the first 5'UTR of  two first transcript should be in green and not the first 5'UTR and the 6th exon for 3 other transcripts. but I want to have only the featu ...
written 2.4 years ago by Tiphaine Martin20
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Change the features and colors in BiomartGeneRegionTrack
... Dear Florian,   I would like to change the color of some exons in genes from ENSEMBL. In some case, it works well, cf below gen<- "hg19" chr <- "chr15" start <- 75011669 end <- 75019876 interestfeatures <- rbind(c("75017782","75017835","bad"),c("75013755","75013844","good")) inte ...
gviz written 2.4 years ago by Tiphaine Martin20
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News: Conference in mathematical and quantitative omics, May, 29th, London
... Dear Bioconductor developpers and users, A group of PhD students organise the 2nd edition of Quantitative Genomics meeting on May 29th at the Wellcome Trust Headquarters, London, UK . It is a conference for students in mathematical and quantitative omics and the conference will feature talks by Pr ...
news conference written 2.7 years ago by Tiphaine Martin20
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Answer: A: Show the name of genetic elements and change the color according to its feature
... thanks for this information ...
written 2.7 years ago by Tiphaine Martin20

Latest awards to Tiphaine Martin

Popular Question 19 months ago, created a question with more than 1,000 views. For install new package from bioconductor
Scholar 2.1 years ago, created an answer that has been accepted. For A: install new package from bioconductor
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Issue to install biomaRt, Gviz, rtracklayer, and S4Vectors under BioC 3.0

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