User: prabhakar ghorpade

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Posts by prabhakar ghorpade

<prev • 10 results • page 1 of 1 • next >
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Blast analysis of two sequences in R
... Hello,       I have following sequences for which I want to BLAST and see result only for sequences showing > 95% Query coverage and >90% identity? Sequences >1 CTTTGTCTTCCCCTATGTCATCCTCAATCTCTATGAAAGCAACAC >2 CTATGTCATCCTCAATCTCTATGAAAGCAACACCGCTACCATAGA Can you please Suggest how ca ...
coverage written 5.5 years ago by prabhakar ghorpade100 • updated 5.5 years ago by Martin Morgan ♦♦ 23k
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Answer: A: .CEL file
... Did You tried BRB Array Tool. It uses Excel. Dr. Ghorpade Prabhakar B. PhD Scholar ( Veterinary Biochemistry), IVRI, Izatnagar, Bareilly, U.P., India On Friday, 28 March 2014 2:35 AM, James W. MacDonald wrote: OK, well in that case good luck! I don't think I can help you with that, but maybe s ...
written 5.6 years ago by prabhakar ghorpade100
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.CEL file
... Hi,    How can I view .CEL file? Is it possible to make dummy .CEL file for analysis? Regards, Prabhakar Dr. Ghorpade Prabhakar B. PhD Scholar ( Veterinary Biochemistry), IVRI, Izatnagar, Bareilly, U.P., India [[alternative HTML version deleted]] ...
written 5.6 years ago by prabhakar ghorpade100
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Data file request
... Hi,    Can You give me one microarray file (Image, .DAT, .CEL and other ) from agilent data for trial analysis? I would be nice if article about is published and detailed description is available to facilitate analysis. Did anyone has diagnostic array file too? Thanks. Kind regards, Prabhakar Dr. ...
microarray written 5.6 years ago by prabhakar ghorpade100 • updated 5.6 years ago by Steve Lianoglou12k
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Comment: C: Microarray data analysis
... Thanks for reply Sean,             Did I need to go through Bioconductor Case Studies. I am not sure if I should proceed with it or not as book is published in 2008. Could it be outdated in current context of microarray analysis. Sincerely, Prabhakar Dr. Ghorpade Prabhakar B. PhD Scholar ( Veterin ...
written 5.6 years ago by prabhakar ghorpade100
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Comment: C: Microarray data analysis
... Hello, Thanks for reply.  I am trying to run limma with user guide instructions but from page 11 of user guide. I am getting following error > targets <- readTargets("targets.txt") Error in file(file, "rt") : cannot open the connection In addition: Warning message: In file(file, "rt") :   can ...
written 5.6 years ago by prabhakar ghorpade100
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Comment: C: Library loading problem
... Hello,         Thanks for reply. Isn't it possible to download all relevant packages for running particular package at once. Regards, Prabhakar  Dr. Ghorpade Prabhakar B. PhD Scholar ( Veterinary Biochemistry), IVRI, Izatnagar, Bareilly, U.P., India On Sunday, 23 March 2014 3:41 AM, Dan Ten ...
written 5.6 years ago by prabhakar ghorpade100
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Is there solution to offline running Bioconductor limma
... Hello,        Is there solution to offline running Bioconductor in R? For example I want to run Bioconductor package limma offline for that each time it ask for other dependency packages for which I need to download them from online site. Is it possible to download all dependencies for particular pa ...
limma written 5.6 years ago by prabhakar ghorpade100 • updated 5.6 years ago by Dan Tenenbaum8.2k
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Library loading problem
... Hi, I have installed affy package in R version 3.0.3 from local zip library. When I tried access affy by library("affy") I am getting following message saying error in affy package at last. How can I resolve it. Similar problem is encountered in accessing other packages installed from local zip lib ...
affy written 5.6 years ago by prabhakar ghorpade100 • updated 5.6 years ago by Dan Tenenbaum8.2k
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Answer: A: Microarray data analysis
... Hi Friends,    I want to use Bioconductor for microarray data analysis for that I need one example data on which I can try R codes? Can you please suggest start point for learning Bioconductor. Which package I should start with? Thanks. [[alternative HTML version deleted]] ...
written 5.6 years ago by prabhakar ghorpade100

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Popular Question 5.5 years ago, created a question with more than 1,000 views. For Blast analysis of two sequences in R

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