User: Federico Marini

gravatar for Federico Marini
Reputation:
110
Status:
Trusted
Location:
Germany
Last seen:
1 week, 2 days ago
Joined:
4 years, 9 months ago
Email:
m******@uni-mainz.de

Posts by Federico Marini

<prev • 29 results • page 1 of 3 • next >
0
votes
1
answers
172
views
1
answers
Comment: C: DESeq2 - v1.18 different p-values from v1.20 (Is it minmu?)
... Have a look here, there is a reference to that parameter. https://github.com/mikelove/DESeq2/blob/a24c0bd71fb4a621a7c0772ca00825db5af5c69b/NEWS#L26   ...
written 4 months ago by Federico Marini110
0
votes
3
answers
137
views
3
answers
Comment: C: How can I get all installed Bioconductor packages?
... I think the OP can be quite satisfied with the material over here, the latest one is nice & compact indeed   ...
written 5 months ago by Federico Marini110
0
votes
3
answers
137
views
3
answers
Comment: C: How can I get all installed Bioconductor packages?
... I think I wrote my piece of code before the nice sessioninfo came out, and sticked to that since it was working :D ...
written 5 months ago by Federico Marini110
0
votes
3
answers
137
views
3
answers
Answer: A: How can I get all installed Bioconductor packages?
... Hi ishenweiyan, this is part of a script I use to document every now and then the packages I have stored by major R version change # using package_info for the extra info delivered ### -> you might need to change the lib.loc according to system/version allpkgs <- (devtools:::package_info(ro ...
written 5 months ago by Federico Marini110
0
votes
1
answers
106
views
1
answers
Answer: A: SPIA function error in ToPASeq
... AFAIK ToPASeq does not load SPIA, so it seems normal that the function is not available. library(SPIA) could do the job? ...
written 6 months ago by Federico Marini110
2
votes
0
answers
449
views
5 follow
0
answers
Job: Bioinformatician/Biostatistician - Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI), Mainz, Germany
... The Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI) at the University Medical Center, is seeking a motivated Bioinformatician/Statistician (m/f) - Reference 50028764 The Division Biostatistics/Bioinformatics coordinates various biostatistical/bioinformatic supporting acti ...
0
votes
1
answers
371
views
1
answers
Comment: C: Error in pcaplot3d from pcaExplorer, when running Deseq2 since update of package
... As a long term solution, I updated the code to the call for pcaplot3d which was using threejs. The issue was related to some new major changes in rthreejs. It should be fixed now, as in https://github.com/federicomarini/pcaExplorer/commit/95422a244a183329bbd183785e3fef4be5d1ebe4. The changes would ...
written 15 months ago by Federico Marini110
0
votes
4
answers
617
views
4
answers
Answer: A: pcaEcplorer PCA2go function crashing
... For the benefit of other users that could encounter the same problem:   It was indeed connected to the fact of being the dataset so small. In the default values of limmaquickpca2go, I use a higher values for the number of genes to use in the PCA and to use for the highest loadings then the actual ...
written 15 months ago by Federico Marini110
0
votes
4
answers
617
views
4
answers
Comment: C: pcaEcplorer PCA2go function crashing
... You can use the email address you obtain when typing  maintainer("pcaExplorer") Thank you for trying out in the meanwhile on the airway set. ...
written 16 months ago by Federico Marini110
0
votes
4
answers
617
views
4
answers
Answer: A: pcaEcplorer PCA2go function crashing
... I'd probably need the data to tell you more. If you can't do this (e.g. unpublished data or so), would you please to perform the same operations on the data from the airway package? You can do so in a quick way by picking from the code of  library(pcaExplorer) example(pcaExplorer) and then use ...
written 16 months ago by Federico Marini110

Latest awards to Federico Marini

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 201 users visited in the last hour