User: Surles, Monique

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Posts by Surles, Monique

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Answer: A: Warning Message-depreciated after running rma in oligo package
... Thank you for the response. Monique ...
written 4.6 years ago by Surles, Monique • 50
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Warning Message-depreciated after running rma in oligo package
... Dear List, I am unable to use rma() to process my data. I am using Windows 7 Professional(32 bit).Please assist. Is it because of the pd.ragene.2.0st warning message? Did I miss something? Thank you for your help. Warning message: package ‘pd.ragene.2.0.st’ was built under R version 3.2.0 Warni ...
oligo pd.ragene.2.0.st written 4.6 years ago by Surles, Monique • 50
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Comment: C: Error in validObject(.Object)
... Thank you again for your help, Jim. I will try to do what was suggested. No, I didn't get the idea to read data into the AffyBatch and then add the phenoData from y'all literature. It was an error on my part. Best, Monique -----Original Message----- From: James W. MacDonald [mailto:jmacdon@uw.edu ...
written 5.3 years ago by Surles, Monique • 50
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Error in validObject(.Object)
... Hi List, When trying to do a RMA or Mas5 analysis on my microarray data, the following error keeps coming up....Error in validObject(.Object) : invalid class "ExpressionSet" object: sampleNames differ between phenoData and protocolDat". I went back and confirmed that the sample names are the sam ...
microarray go written 5.3 years ago by Surles, Monique • 50 • updated 5.3 years ago by James W. MacDonald ♦ 51k
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Comment: C: Error: could not find function "plotPCA"
... Hi Jim, Thank you so much.....it worked. Monique -----Original Message----- From: James W. MacDonald [mailto:jmacdon@uw.edu] Sent: Thursday, May 22, 2014 5:31 PM To: Surles, Monique Cc: bioconductor at r-project.org; Michael Love Subject: Re: [BioC] Error: could not find function "plotPCA" Hi Moni ...
written 5.4 years ago by Surles, Monique • 50
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Comment: C: Error: could not find function "plotPCA"
... Hi Micheal, No, there is still an after library(affycoretools) Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : there is no package called ?ff? Error: package or namespace load failed for ?affycoretools? Monique -----Original Message----- From: Michael ...
written 5.4 years ago by Surles, Monique • 50
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Error: could not find function "plotPCA"
... Dear List, While affycoretools were loaded, I am unable to get plotPCA to work,. I am using Windows 7 Professional(32 bit). Error: could not find function "plotPCA" Please assist…Is there something I am missing? Thank you Some relevant excerpts from my session: version 3.0.3 (2014-03-06) -- ...
go affycoretools keggrest written 5.4 years ago by Surles, Monique • 50 • updated 5.4 years ago by Michael Love ♦ 25k

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Popular Question 4.6 years ago, created a question with more than 1,000 views. For Error in validObject(.Object)
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