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User: Surles, Monique
Surles, Monique • 50
- Reputation:
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- Joined:
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Posts by Surles, Monique
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... Thank you for the response.
Monique
...
written 3.9 years ago by
Surles, Monique • 50
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Dear List,
I am unable to use rma() to process my data. I am using Windows 7 Professional(32 bit).Please assist. Is it because of the pd.ragene.2.0st warning message? Did I miss something? Thank you for your help.
Warning message: package ‘pd.ragene.2.0.st’ was built under R version 3.2.0
Warni ...
written 3.9 years ago by
Surles, Monique • 50
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Comment:
C: Error in validObject(.Object)
... Thank you again for your help, Jim. I will try to do what was
suggested.
No, I didn't get the idea to read data into the AffyBatch and then add
the phenoData from y'all literature. It was an error on my part.
Best,
Monique
-----Original Message-----
From: James W. MacDonald [mailto:jmacdon@uw.edu ...
written 4.7 years ago by
Surles, Monique • 50
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... Hi List,
When trying to do a RMA or Mas5 analysis on my microarray data, the
following error keeps coming up....Error in validObject(.Object) :
invalid class "ExpressionSet" object: sampleNames differ between
phenoData and protocolDat".
I went back and confirmed that the sample names are the sam ...
written 4.7 years ago by
Surles, Monique • 50
• updated
4.7 years ago by
James W. MacDonald ♦ 49k
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... Hi Jim,
Thank you so much.....it worked.
Monique
-----Original Message-----
From: James W. MacDonald [mailto:jmacdon@uw.edu]
Sent: Thursday, May 22, 2014 5:31 PM
To: Surles, Monique
Cc: bioconductor at r-project.org; Michael Love
Subject: Re: [BioC] Error: could not find function "plotPCA"
Hi Moni ...
written 4.7 years ago by
Surles, Monique • 50
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... Hi Micheal,
No, there is still an after library(affycoretools)
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()),
versionCheck = vI[[j]]) :
there is no package called ?ff?
Error: package or namespace load failed for ?affycoretools?
Monique
-----Original Message-----
From: Michael ...
written 4.7 years ago by
Surles, Monique • 50
0
votes
1
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1.5k
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1
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... Dear List,
While affycoretools were loaded, I am unable to get plotPCA to work,.
I am using Windows 7 Professional(32 bit).
Error: could not find function "plotPCA"
Please assistâ¦Is there something I am missing? Thank you
Some relevant excerpts from
my session:
version 3.0.3 (2014-03-06) -- ...
written 4.7 years ago by
Surles, Monique • 50
• updated
4.7 years ago by
Michael Love ♦ 21k
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For Error in validObject(.Object)
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