User: John Brothers II
- Cambridge, MA
- Last seen:
- 4 months, 3 weeks ago
- 4 years, 10 months ago
Posts by John Brothers II
... Hi Gordon, Thanks for taking the time to provide the very informative response on the reasoning involved in calculating the voom E and edgeR log-cpm values. It is nice to know the reasons behind the differences, as subtle as they might be. Cheers, John On Tue, Jun 3, 2014 at 7:51 PM, Gordon K S ...
... Hello, I have a quick question about E-values in voom versus cpm from edgeR E-values from voom are calculated in the following way -> t(log2(t(counts + 0.5)/(lib.size + 1) * 1e+06)) If I understand this correctly, this is log2 counts per million of counts with a pseudo-count of 0.5, normalized ...
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Student 2.3 years ago, asked a question with at least 3 up-votes. For Differences between limma voom E values and edgeR cpm values?
Popular Question 4.5 years ago, created a question with more than 1,000 views. For Differences between limma voom E values and edgeR cpm values?
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