User: John Brothers II

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60
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Location:
Cambridge, MA
Twitter:
bioinfomagician
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4 years, 10 months ago
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Posts by John Brothers II

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Answer: A: Differences between limma voom E values and edgeR cpm values?
... Hi Gordon, Thanks for taking the time to provide the very informative response on the reasoning involved in calculating the voom E and edgeR log-cpm values. It is nice to know the reasons behind the differences, as subtle as they might be. Cheers, John On Tue, Jun 3, 2014 at 7:51 PM, Gordon K S ...
written 4.9 years ago by John Brothers II60
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Differences between limma voom E values and edgeR cpm values?
... Hello, I have a quick question about E-values in voom versus cpm from edgeR E-values from voom are calculated in the following way -> t(log2(t(counts + 0.5)/(lib.size + 1) * 1e+06)) If I understand this correctly, this is log2 counts per million of counts with a pseudo-count of 0.5, normalized ...
edger written 4.9 years ago by John Brothers II60 • updated 4.6 years ago by Gordon Smyth37k

Latest awards to John Brothers II

Student 2.3 years ago, asked a question with at least 3 up-votes. For Differences between limma voom E values and edgeR cpm values?
Popular Question 4.5 years ago, created a question with more than 1,000 views. For Differences between limma voom E values and edgeR cpm values?

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