User: Jakub Stanislaw Nowak

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Posts by Jakub Stanislaw Nowak

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Comment: C: Generating heat map of pre-organised data in matrix without clustering using ggp
... The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. ...
written 5.1 years ago by Jakub Stanislaw Nowak70
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Generating heat map of pre-organised data in matrix without clustering using ggplot2 or heatmap.2
... Hello bioconductor friends, I am trying to generate heatmaps for my data and run in following problems. I would be grateful for some suggestions about heat map code. I arranged matrix for the heatmap by myself and I would like to keep this not changed during heat map plotting. I tried both heatmap ...
clustering written 5.1 years ago by Jakub Stanislaw Nowak70 • updated 5.1 years ago by James W. MacDonald51k
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Comment: C: finding differential expression pattern between paired columns of data frame.
... The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. ...
written 5.1 years ago by Jakub Stanislaw Nowak70
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finding differential expression pattern between paired columns of data frame.
... Hello Bioconductor list members, I am trying to analyse output of my smallRNA sequencing data. My starting point is a table with differentially expressed miRs between two stages of different cell types. My goal is to identify miRs that are changing in LineA - Line D and not changing in LineB - Line ...
sequencing smallrna microarray limma written 5.1 years ago by Jakub Stanislaw Nowak70 • updated 5.1 years ago by James W. MacDonald51k
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Comment: C: annotating microarray data with mogene10stv1
... The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. ...
written 5.2 years ago by Jakub Stanislaw Nowak70
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Comment: C: annotating microarray data with mogene10stv1
... The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. ...
written 5.2 years ago by Jakub Stanislaw Nowak70
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annotating microarray data with mogene10stv1
... Hello everyone, This my first attempt so it may not be a perfect email. I am not very advanced in bioinformatics so I tried to be very detailed. Basically I am trying to annotate microarray dataset from Affymetrix using bioconductor. I used following steps: 1. loading libraries > library(anno ...
microarray annotation annotate limma assign written 5.2 years ago by Jakub Stanislaw Nowak70 • updated 5.2 years ago by James W. MacDonald51k

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Popular Question 5.1 years ago, created a question with more than 1,000 views. For annotating microarray data with mogene10stv1

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