User: Carroll, Thomas

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Posts by Carroll, Thomas

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Comment: C: ChiPQC and paired-end data
... Hi Ugo, >To be sure I understand you mean: >$ samtools view -f 64 That sounds right to get the first in pair. Cheers, tom Thomas Carroll Head of Bioinformatics MRC Clinical Sciences Centre, Faculty of Medicine, Imperial College London,Hammersmith Hospital Campus Du Cane Road,London,W12 0N ...
written 5.3 years ago by Carroll, Thomas20
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Answer: A: ChiPQC and paired-end data
... Hi Ugo, Sorry for the delay in reply. If you include the maintainers in the post then I will get a quicker notification. I usually supply blacklists as GRanges objects and this is what i have done when using mm9 blacklists myself form Anshul Kudaje's site. ChIPQC expects there to be a header when ...
written 5.3 years ago by Carroll, Thomas20

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