User: Jens Reeder

gravatar for Jens Reeder
Jens Reeder40
Reputation:
40
Status:
New User
Location:
Last seen:
3 years ago
Joined:
4 years, 11 months ago
Email:
j**********@gmail.com

Posts by Jens Reeder

<prev • 3 results • page 1 of 1 • next >
2
votes
1
answer
535
views
1
answers
Answer: A: Source of ribosomal RNA sequences to build rrna_genome index for the HTSeqGenie
... Hi Thomas, thanks for the praise. You should be able to pull a list from the ensembl biomart using a query like this: (In case this link  doesn't survive pasting, it basically selects all genes with biotype rRNA and reduces to just the ones having an EntrezID) Good luck with your analysis. Jens ...
written 3.1 years ago by Jens Reeder40
0
votes
0
answers
781
views
0
answers
[devteam-bioc] parallel BAM sorting with Rsamtools
... Hi Martin, while you are at it, Do you think you could also expose the samtools cat command at the R level? (from the samtools help: http://samtools.sourceforge.net/samtools.shtml) samtools cat [-h header.sam] [-o out.bam] [ ... ] While functionally this can already be done using mergeBam(), s ...
cancer rsamtools biocparallel written 5.0 years ago by Jens Reeder40
0
votes
1
answer
903
views
1
answers
Comment: C: parallel BAM sorting with Rsamtools
... That's great to hear. I'll keep an eye open for the new Rhtslib. Hopefully the windows issues will not keep it out of the next bioc release. thanks Jens On Fri, Aug 29, 2014 at 1:26 PM, Martin Morgan wrote: > On 08/29/2014 10:36 AM, Maintainer wrote: > >> Hi Jens, >> >> ...
written 5.0 years ago by Jens Reeder40

Latest awards to Jens Reeder

Scholar 5.0 years ago, created an answer that has been accepted. For A: Source of ribosomal RNA sequences to build rrna_genome index for the HTSeqGenie

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 253 users visited in the last hour