User: Pau Marc Muñoz Torres

Reputation:
20
Status:
New User
Location:
Barcelona
Last seen:
4 months, 1 week ago
Joined:
3 years, 2 months ago
Email:
p******@gmail.com

Posts by Pau Marc Muñoz Torres

<prev • 25 results • page 1 of 3 • next >
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Answer: A: getReadCountsFromBAM including bed information
... solved using  X <- getSegmentReadCountsFromBAM(BAMFiles,GR=gr) ...
written 4 months ago by Pau Marc Muñoz Torres20
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getReadCountsFromBAM including bed information
... Good morning  I am traying to analize some bam files using cn.mops. The scipt I am using until I try to introduce Graneges object to the getReadCountsFromBAM function. To read the bed file and convert it to Granges object i use a funtion (the code is in this post). Nevetheless i am getting the foll ...
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Comment: C: Package ‘GenomicRanges’ version 1.20.8 cannot be unloaded
... Thanks you Herve, I will proceed as you suggest ...
written 2.1 years ago by Pau Marc Muñoz Torres20
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Answer: A: Detect short tandem repetitions from bam file
... Hi    Thanks for the answer, it will be useful   pau ...
written 2.1 years ago by Pau Marc Muñoz Torres20
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Answer: A: Detect short tandem repetitions from bam file
... Hi    Thanks for the answer, it will be useful   pau ...
written 2.1 years ago by Pau Marc Muñoz Torres20
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Answer: A: Detect short tandem repetitions from bam file
... Hi    Thanks for the answer, it will be useful   pau ...
written 2.1 years ago by Pau Marc Muñoz Torres20
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Answer: A: Detect short tandem repetitions from bam file
... Hi    Thanks for the answer, it will be useful   pau ...
written 2.1 years ago by Pau Marc Muñoz Torres20
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Comment: A: Package ‘GenomicRanges’ version 1.20.8 cannot be unloaded
... Ok, I'm sorry. I will write to RAPIDR authors, anyway i do not understand why GenomicRanges changes so much, when i write a program i expect some estability with libraries. This kind of bug is not reported for the first time in Rapidr. My last update of the genomic ranges library was las 19/10, so a ...
written 2.1 years ago by Pau Marc Muñoz Torres20
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Package ‘GenomicRanges’ version 1.20.8 cannot be unloaded
... library("RAPIDR") makeBinnedCountsFile(c("nfamele1_sorted.bam","nfamele2_sorted.bam","nMALE1_sorted.bam","nMALE2_sorted.bam","T-SRR611848_1_sorted.bam"),c("nfamele1","nfamele2","nMALE1","nMALE2","T-SRR611848"),"binnedcounts.r",mask=NULL,k=20000)     I am getting the following error in a script t ...
genomicranges rapidr written 2.1 years ago by Pau Marc Muñoz Torres20
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Detect short tandem repetitions from bam file
... Hello    I am wondering if there is some package to detect str in a Bam file. I have found some things for RNA, but I don't know if they also can be used for DNA   thanks ...

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