User: Pau Marc Muñoz Torres

Reputation:
20
Status:
New User
Location:
Barcelona
Last seen:
11 months, 1 week ago
Joined:
3 years, 9 months ago
Email:
p******@gmail.com

Posts by Pau Marc Muñoz Torres

<prev • 25 results • page 1 of 3 • next >
0
votes
1
answers
175
views
1
answers
Answer: A: getReadCountsFromBAM including bed information
... solved using  X <- getSegmentReadCountsFromBAM(BAMFiles,GR=gr) ...
written 11 months ago by Pau Marc Muñoz Torres20
0
votes
1
answer
175
views
1
answer
getReadCountsFromBAM including bed information
... Good morning  I am traying to analize some bam files using cn.mops. The scipt I am using until I try to introduce Graneges object to the getReadCountsFromBAM function. To read the bed file and convert it to Granges object i use a funtion (the code is in this post). Nevetheless i am getting the foll ...
0
votes
1
answers
1.5k
views
1
answers
Comment: C: Package ‘GenomicRanges’ version 1.20.8 cannot be unloaded
... Thanks you Herve, I will proceed as you suggest ...
written 2.7 years ago by Pau Marc Muñoz Torres20
0
votes
5
answers
562
views
5
answers
Answer: A: Detect short tandem repetitions from bam file
... Hi    Thanks for the answer, it will be useful   pau ...
written 2.7 years ago by Pau Marc Muñoz Torres20
0
votes
5
answers
562
views
5
answers
Answer: A: Detect short tandem repetitions from bam file
... Hi    Thanks for the answer, it will be useful   pau ...
written 2.7 years ago by Pau Marc Muñoz Torres20
0
votes
5
answers
562
views
5
answers
Answer: A: Detect short tandem repetitions from bam file
... Hi    Thanks for the answer, it will be useful   pau ...
written 2.7 years ago by Pau Marc Muñoz Torres20
0
votes
5
answers
562
views
5
answers
Answer: A: Detect short tandem repetitions from bam file
... Hi    Thanks for the answer, it will be useful   pau ...
written 2.7 years ago by Pau Marc Muñoz Torres20
0
votes
1
answers
1.5k
views
1
answers
Comment: A: Package ‘GenomicRanges’ version 1.20.8 cannot be unloaded
... Ok, I'm sorry. I will write to RAPIDR authors, anyway i do not understand why GenomicRanges changes so much, when i write a program i expect some estability with libraries. This kind of bug is not reported for the first time in Rapidr. My last update of the genomic ranges library was las 19/10, so a ...
written 2.7 years ago by Pau Marc Muñoz Torres20
0
votes
1
answer
1.5k
views
1
answer
Package ‘GenomicRanges’ version 1.20.8 cannot be unloaded
... library("RAPIDR") makeBinnedCountsFile(c("nfamele1_sorted.bam","nfamele2_sorted.bam","nMALE1_sorted.bam","nMALE2_sorted.bam","T-SRR611848_1_sorted.bam"),c("nfamele1","nfamele2","nMALE1","nMALE2","T-SRR611848"),"binnedcounts.r",mask=NULL,k=20000)     I am getting the following error in a script t ...
genomicranges rapidr written 2.7 years ago by Pau Marc Muñoz Torres20
1
vote
5
answers
562
views
5
answers
Detect short tandem repetitions from bam file
... Hello    I am wondering if there is some package to detect str in a Bam file. I have found some things for RNA, but I don't know if they also can be used for DNA   thanks ...

Latest awards to Pau Marc Muñoz Torres

Popular Question 12 months ago, created a question with more than 1,000 views. For Package ‘GenomicRanges’ version 1.20.8 cannot be unloaded

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 146 users visited in the last hour