User: Patrick Kimes

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Boston, MA, USA
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http://pkim.es/
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Postdoctoral Research Fellow 

Biostatistics and Computational Biology, Dana-Farber Cancer Institute

Biostatistics, Harvard TH Chan School of Public Health

Posts by Patrick Kimes

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Comment: C: Importing RSEM transcript-level data using tximport
... I should have read the docs closer - thanks for pointing me to the manual options! (Also, sorry - probably shouldn't have assumed that these changes would be "fairly quick". Thanks for the hard work.) ...
written 11 weeks ago by Patrick Kimes0
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Importing RSEM transcript-level data using tximport
... I'd like to read in transcript-level results from RSEM using the tximport package, but this does not appear to be supported. The tximport vignette only describes importing sample.genes.results (gene-level) data, and the tximport::tximport function is hard-coded to set txIn = FALSE when type = "rsem" ...
tximport rsem written 11 weeks ago by Patrick Kimes0 • updated 11 weeks ago by Michael Love16k

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